| Sequence ID | dm3.chr3L |
|---|---|
| Location | 6,134,125 – 6,134,229 |
| Length | 104 |
| Max. P | 0.862532 |
| Location | 6,134,125 – 6,134,229 |
|---|---|
| Length | 104 |
| Sequences | 7 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 68.27 |
| Shannon entropy | 0.58860 |
| G+C content | 0.48049 |
| Mean single sequence MFE | -30.82 |
| Consensus MFE | -16.07 |
| Energy contribution | -18.39 |
| Covariance contribution | 2.31 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.96 |
| SVM RNA-class probability | 0.862532 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 6134125 104 + 24543557 -----AUACCAAGCUCAGCCGACUAAGGCUGGGCUAUGUAUGCCCUACAAUACCACAAUACAUCGG-GGCGUAUGCGUAAUGUCACUGCUGGUCAUUU-UCGGGCAUUAUA------ -----((((..(((((((((......)))))))))..))))((((...(((((((((..((((...-.(((....))).))))...)).)))).))).-..))))......------ ( -35.10, z-score = -2.12, R) >droSim1.chr3L 5635118 101 + 22553184 --------CCAAGCUCAGCCGACUAAGGCUGGGCUAUGUAUGCCCUACAAUACAACAAUACAUCGG-GGCGUAUGCGUAAUGUCACUGCUGGUCAUUU-UCGGGCAUUAUA------ --------...(((((((((......)))))))))..(((((((((..................))-)))))))..(((((((.....((((......-))))))))))).------ ( -34.47, z-score = -2.35, R) >droSec1.super_2 6078885 101 + 7591821 --------CCAAGCUCAGCCGACUAAGGCUGGGCUAUGUAUGCCCUACAAUACAGCAAUACAUCGG-GGCGUAUGCGUAAUGUCACUGCUGGUCAUUU-UCGGGCAUUAUA------ --------...(((((((((......)))))))))(((.((((((.......(((((..((((...-.(((....))).))))...))))).......-..))))))))).------ ( -36.89, z-score = -2.55, R) >droYak2.chr3L 6718085 104 + 24197627 -----AUACCAAGCUCAGUCGACUAUGGCUCUACUAUGCAUGCCCUACAAUACCACAAUACAACUG-GGCGUAUGCGUAAUGUCACUGCUGGUCAUUU-UCGGGCGUUAUA------ -----.......((((((..(((((((((.....(((((((((((((.................))-)).)))))))))..))))....)))))...)-).))))......------ ( -24.23, z-score = 0.11, R) >droEre2.scaffold_4784 8830593 104 + 25762168 -----AUACCAAGCUCAGUCGACUAUGGCUGAGCUAUGCAUGCCCUACAAUACCACAAUACAACUG-GGCGUAUGCGUAAUGUCACUGCUGGUCAUUU-UCGGGCAUUAUA------ -----.......((((((((......))))))))(((((((((((((.................))-)).))))))))).......((((.(......-.).)))).....------ ( -31.23, z-score = -1.63, R) >droAna3.scaffold_13337 2493234 104 - 23293914 AAAGCGAUGCGAGCUUCGCUAACAUCGGCUGGGCUAUG----CCCUACA--------AUACAACGG-GGCGUAUGCGUAAUGCCAUGUCAGGUCAUUUGCCGGGCUGGGCCAGCAUA ....(((((..(((...)))..)))))(((((((((((----((((...--------.......))-)))))).))......(((.(((.(((.....))).)))))).)))))... ( -40.40, z-score = -1.06, R) >droGri2.scaffold_15110 1897663 83 + 24565398 --------------ACGAACGUGAGAGACUGGCGUAUA----CCCUGUG--------AUUUAACUGUGAUCUGUGAUCGAUUCGACUAUUGAUGCUUG--UCAGCAAUAUA------ --------------.....(....).(((.(((.....----......(--------(((.......))))....((((((......))))))))).)--)).........------ ( -13.40, z-score = 1.16, R) >consensus ________CCAAGCUCAGCCGACUAAGGCUGGGCUAUGUAUGCCCUACAAUACCACAAUACAACGG_GGCGUAUGCGUAAUGUCACUGCUGGUCAUUU_UCGGGCAUUAUA______ ...........(((((((((......)))))))))....((((((.......................(((....)))((((((......)).))))....)))))).......... (-16.07 = -18.39 + 2.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:06:40 2011