| Sequence ID | dm3.chr3L |
|---|---|
| Location | 6,110,007 – 6,110,102 |
| Length | 95 |
| Max. P | 0.718479 |
| Location | 6,110,007 – 6,110,102 |
|---|---|
| Length | 95 |
| Sequences | 12 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 60.36 |
| Shannon entropy | 0.86037 |
| G+C content | 0.42095 |
| Mean single sequence MFE | -25.89 |
| Consensus MFE | -3.80 |
| Energy contribution | -4.07 |
| Covariance contribution | 0.26 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.15 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.718479 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 6110007 95 + 24543557 -------GCUGAAACGAAAGUCACUUUCAAAAUGGUCGGAUUCAAUGCCUCUGACCAGUUGCCAAG-CAAAAUCAAUAACUCC-UAUUGAUCCUGCGCUGGGGC -------(((..((((((((...)))))....((((((((.........))))))))))).(((.(-((..(((((((.....-)))))))..)))..)))))) ( -28.00, z-score = -2.73, R) >droPer1.super_35 163302 94 + 973955 -------GCACAAAUGAAAGUCAAUUGCAGA--GGUUUUUCAUAGUCUCUCUGACCAGCGUCGGGG-UAAAAUCAAUAACUCCCUAUUGAUCCUGCGCUGGGGC -------............(((.....((((--((..((....))..)))))).((((((.((((.-....(((((((......)))))))))))))))))))) ( -28.20, z-score = -2.12, R) >dp4.chrXR_group6 3753440 94 - 13314419 -------GCACAAAUGAAAGUCAAUUGCAGA--GGUUUUUCAUAGUCUCUCUGACCAGCGUUGGGGGUAAAAUCAAUAACUCC-UAUUGAUCCUGCGCUGGGGC -------............(((.....((((--((..((....))..)))))).(((((((.((.......(((((((.....-))))))))).)))))))))) ( -25.71, z-score = -1.12, R) >droAna3.scaffold_13337 2466744 91 - 23293914 -------UUCCAAACAAAAGCCAACU-UGAA--AAUCGUGUUCAUUGCCUUUGACCACGACCGAG--UAAAAUCAAUAAUUCG-UAUUGAUCCUGCGCUGGGGC -------............(((....-....--..(((((.(((.......))).)))))(((.(--((..(((((((.....-)))))))..)))..)))))) ( -22.00, z-score = -2.00, R) >droEre2.scaffold_4784 8808777 95 + 25762168 -------CCAGAAACGAAAGUCACUUUCAAAAUGGUCGGAUUCAAUGCCUCUGACCAGUUGCCAGG-CAAAAUCAAUAACUCC-UAUUGAUCCUGCGCUGGGGC -------((...((((((((...)))))....((((((((.........))))))))))).(((((-((..(((((((.....-)))))))..))).)))))). ( -30.30, z-score = -2.96, R) >droYak2.chr3L 6693917 95 + 24197627 -------CCUGAAUCGAAAGUCACUUUCAAAAUGGUUGGAUUCAAUGCCUCUGACCAGUUGCCAGG-CAAAAUCAAUAACUCC-UAUUGAUCCUGCGCUGGGGC -------........(((((...)))))....((((..((.........))..))))....(((((-((..(((((((.....-)))))))..))).))))... ( -26.20, z-score = -1.58, R) >droSec1.super_2 6057858 95 + 7591821 -------GCUGAAACGAAAGUCACUUUCAAAAUGGUCGGAUUCAAUGCCUCUGACCAGUUGCCAGG-CAAAAUCAAUAACUCC-UAUUGAUCCUGCGCUGGGGC -------(((..((((((((...)))))....((((((((.........))))))))))).(((((-((..(((((((.....-)))))))..))).))))))) ( -31.00, z-score = -3.19, R) >droSim1.chr3L 5613403 95 + 22553184 -------GCUGAAAUGAAAGUCACUUUCAAAAUGGUCGGAUUCAAUGCCUCUGACCAGUUGCCAGG-CAAAAUCAAUAACUCC-UAUUGAUCCUGCGCUGGGGC -------(((....((((((...))))))...((((((((.........))))))))....(((((-((..(((((((.....-)))))))..))).))))))) ( -30.40, z-score = -2.91, R) >droWil1.scaffold_180698 3398187 89 + 11422946 -UUCAAUGAAUGAAUGAAAGUCACUAGAAUCAAAAGUUUAUGCGCUGAGUUUAAACAAACA-------AAAAUCAAUAGAUUC-UAUUGAUCCAGAGC------ -....((((((...(((...((....)).)))...))))))((.(((.((((....)))).-------...((((((((...)-))))))).))).))------ ( -14.00, z-score = -0.82, R) >droVir3.scaffold_13049 634313 101 + 25233164 AUUCAACAUUCGACUAACUUUAAUUUGGAAUUGAAUUUGACCGUCA-UGCAAUGAAAGUUG-UUGAGGAAAAUCAAUAAUUUU-UAUUGAUCCUGCGGCAGGAU ..((((.((((((((((.......))))..))))))))))((((..-..((((((((((((-((((......)))))))))))-))))).....))))...... ( -26.00, z-score = -2.63, R) >droMoj3.scaffold_6680 24170370 95 - 24764193 -------ACUCAGAAGUUUUUAAAGUUUAAUUGAAUUUUAGCCCAGCUGCAGCUGAAAGUU-UGAAACAAAAUCAAUAAUUUU-UAUUGAUCCUGCGGCUGUGU -------.............((((((((....))))))))((.(((((((((......((.-....))...(((((((.....-))))))).))))))))).)) ( -21.60, z-score = -1.65, R) >droGri2.scaffold_15110 1877101 99 + 24565398 -GCUAAAAUGUGGCCA-CAUUGAAGUGAAACUUGCUCCAUGCCCCG--GCAACGAAAGUUUGUCGAAUAAAAUCAAUAAUUUU-UAUUGAUCCUGUGGCAGGAU -(((..(((((....)-))))..))).........(((.((((.((--(((((....).)))))).(((..(((((((.....-)))))))..)))))))))). ( -27.30, z-score = -2.45, R) >consensus _______GCUCAAACGAAAGUCACUUUCAAAAUGGUCGGAUUCAAUGCCUCUGACCAGUUGCCAGG_CAAAAUCAAUAACUCC_UAUUGAUCCUGCGCUGGGGC ........................................................................((((((......))))))((((.....)))). ( -3.80 = -4.07 + 0.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:06:37 2011