| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,422,629 – 4,422,725 |
| Length | 96 |
| Max. P | 0.711495 |
| Location | 4,422,629 – 4,422,725 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 77.87 |
| Shannon entropy | 0.41295 |
| G+C content | 0.44517 |
| Mean single sequence MFE | -28.23 |
| Consensus MFE | -17.57 |
| Energy contribution | -17.88 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.711495 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4422629 96 + 23011544 GGGUCACACGGCGGUCGUGGCAAUUUGAUAAAAA-----GCGUGGGCGCCCAAAAAGGGAUUUCAUUGGCUCAGUUUAACUGGGUGUUAAAUUGACCAACA .((((.((((.....))))..((((((((.....-----..(((((..(((.....)))..)))))..((((((.....)))))))))))))))))).... ( -28.30, z-score = -1.17, R) >droAna3.scaffold_12943 1609219 99 - 5039921 GGGUCAGACUAUGGCCGUGCCAAUUUGAUAAAAAUUCACACAUUCACAUUUAUGCGGAGGACUGGUUGGCCU--UUUAGCCAGCUGCUAAAGUGGCCAACG .(((((.....)))))(((..(((((.....)))))..))).(((.((....)).)))......((((((((--((((((.....))))))).))))))). ( -30.80, z-score = -1.71, R) >droEre2.scaffold_4929 4506870 95 + 26641161 GAGUCACUUGGGCGUAGUGCCAAUUUGAUAAAAA-----GUGUGUGCACC-GAAAAAGGAUUUCAUUGGUUCAGUUUAACUGGGUGUUAAAUUGACCAACA (((((.(((...((..((((((((((......))-----)).)).)))))-)...))))))))..(((((.(((((((((.....)))))))))))))).. ( -26.30, z-score = -1.70, R) >droYak2.chr2L 4456611 95 + 22324452 GGGUCACCCGGGUGUAGAGCCAAUUUGAUAAAAA-----GUGUGUGCACC-GAAAAGGGAUUUCAUUGGGUUAGCUUAACUGGGUGUUAAAUUGACCAACA .((((((((.((((((..((...(((.....)))-----..)).))))))-.....)))....((((.(((((...))))).))))......))))).... ( -25.00, z-score = -0.38, R) >droSec1.super_5 2520837 96 + 5866729 GGGUCACACGGCGGUCGUGGCAAUUUGAUAAAAA-----GUGUGUGCGCCCAAAAAGUGAUUUCAUUGGUUCAGUUUAACUGUGUGUUAAAUUGACCAACA ((((((((((.(.((((........)))).....-----))))))).))))..............(((((.(((((((((.....)))))))))))))).. ( -29.50, z-score = -1.99, R) >droSim1.chr2L 4347161 96 + 22036055 GGGUCACACGGCGGUCGUGGCAAUUUGAUAAAAA-----GUGUGUGCGCCCAAAAAGGGAUUUCAUUGGUUCAGUUUAACUGGGUGUUAAAUUGACCAACA ((((((((((.(.((((........)))).....-----))))))).))))..............(((((.(((((((((.....)))))))))))))).. ( -29.50, z-score = -1.85, R) >consensus GGGUCACACGGCGGUCGUGCCAAUUUGAUAAAAA_____GUGUGUGCACCCAAAAAGGGAUUUCAUUGGUUCAGUUUAACUGGGUGUUAAAUUGACCAACA ((((((((((((.......))..(((....))).......)))))).))))..............((((.((((((((((.....)))))))))))))).. (-17.57 = -17.88 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:16:25 2011