| Sequence ID | dm3.chr3L |
|---|---|
| Location | 6,108,775 – 6,108,872 |
| Length | 97 |
| Max. P | 0.685482 |
| Location | 6,108,775 – 6,108,872 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 78.30 |
| Shannon entropy | 0.35866 |
| G+C content | 0.39457 |
| Mean single sequence MFE | -29.66 |
| Consensus MFE | -17.08 |
| Energy contribution | -16.32 |
| Covariance contribution | -0.76 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.685482 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 6108775 97 + 24543557 ------AGUGUGAGUGUGUGUGUGCAAGUGCACUCGACAAAUGCGCGCAAAUGAAGCAUCUGCAUGCACACAUAAG------CAAAACAUAUAAAUAUAUACACAUACC-- ------.(((((.(((((((((((((.(((((.........)))))((.......))...)))))))))))))...------......((((....)))).)))))...-- ( -29.80, z-score = -1.65, R) >droAna3.scaffold_13337 2465558 101 - 23293914 AGCAUGAGCGUGGGUGUGAGUAUGAGUGUGCACUCGACAAAUGCGCACAAAUGAAGCAUCUGCAUAUAUGUAGUAGUACA---GAAAAAUAUAAAAACAAAUUU------- .(((((...(..(((((...(((..(((((((.........)))))))..)))..)))))..)...))))).........---.....................------- ( -23.40, z-score = -0.78, R) >droEre2.scaffold_4784 8807605 97 + 25762168 ------AGUGUGAGUGUGUGUG--CAAGUGCACUCGACAAAUGCGCGCAAAUGAAGCAUCUGCAUGCACACAUAAG------CAAAAUAUAGAAAUAUAAGUAUAUACCUG ------.(((((..((((((((--((.(((((.........)))))(((.(((...))).))).))))))))))..------)....((((....)))).....))))... ( -28.30, z-score = -1.80, R) >droSec1.super_2 6056638 101 + 7591821 ------AGUGUGAGUGUGUGUG--CAAGUGCACUCGACAAAUGCGCGCAAAUGAAGCAUAUGCAUGCACACAUAUGUAUAUGCAAAACAUAUAAAAAUAUACACAUACC-- ------.(((((.(((((((((--((.(((((.........)))))((.......))...)))))))))))((((.((((((.....))))))...)))).)))))...-- ( -33.50, z-score = -2.55, R) >droSim1.chr3L 5612178 101 + 22553184 ------AGUGUGAGUGUGUGUG--CAAGUGCACUCGACAAAUGCGCGCAAAUGAAGCAUCUGCAUGCACACAUAUGUAUAUGCAAAACAUAUAAAAAUAUACACAUACC-- ------.(((((.(((((((((--((.(((((.........)))))((.......))...)))))))))))((((.((((((.....))))))...)))).)))))...-- ( -33.30, z-score = -2.55, R) >consensus ______AGUGUGAGUGUGUGUG__CAAGUGCACUCGACAAAUGCGCGCAAAUGAAGCAUCUGCAUGCACACAUAAGUA_A__CAAAACAUAUAAAAAUAUACACAUACC__ .......(((((.((((((((......((((.(.........).)))).......))))..)))).)))))........................................ (-17.08 = -16.32 + -0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:06:36 2011