| Sequence ID | dm3.chr3L |
|---|---|
| Location | 6,108,027 – 6,108,129 |
| Length | 102 |
| Max. P | 0.955911 |
| Location | 6,108,027 – 6,108,129 |
|---|---|
| Length | 102 |
| Sequences | 10 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 67.22 |
| Shannon entropy | 0.64122 |
| G+C content | 0.46528 |
| Mean single sequence MFE | -15.91 |
| Consensus MFE | -7.81 |
| Energy contribution | -7.82 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.62 |
| SVM RNA-class probability | 0.955911 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 6108027 102 - 24543557 ACCCAUGUCCUUCGUCCGCCGUCCUGC--------------CCCCAGCCCCUCAUCACCCUCUAAUUGAGAAUCCUUUAUGGCAGUUUCAAUUGUUUCCAUUACGCUUCAAUUCCA .................((.(..(((.--------------...)))..)............(((((((((..((.....))...)))))))))..........)).......... ( -10.10, z-score = -0.28, R) >droSec1.super_2 6055899 102 - 7591821 ACCCAUGUCCUUCGUCCUUCGUCCUGC--------------CUCCAGUCCCUCAUCACCCUCUAAUUGAGAAUCCUUUAUGGCAGUUUCAAUUGUUUCCAUUACGCUUCAAUUCCA ............(((.....(..(((.--------------...)))..)............(((((((((..((.....))...)))))))))........)))........... ( -10.00, z-score = -0.79, R) >droYak2.chr3L 6691944 116 - 24197627 GCCCAUGUCCUUCGUCCUUCGUCCUGUCCCCUGCCUCCUGCCUCCUGCCCCAUAUCACCCUCUAAUUGAGAAUCCUUUAUGGCAGUUUCAAUUGUUUCCAUUACGCUUCAAUUCCA ((..(((.....((.....)).........(((((....((.....))...........(((.....)))..........))))).............)))...)).......... ( -10.20, z-score = 0.04, R) >droEre2.scaffold_4784 8806890 108 - 25762168 ACCCAUGUCCUUCGUCCUUCGUCCUUCGUGCU--------GCCCCAGCCCCUCAUCACCCUCUAAUUGAGAAUCCUUUAUGGCAGUUUCAAUUGUUUCCAUUACGCUUCAAUUCCA ..........................((((((--------(...))))..............(((((((((..((.....))...)))))))))........)))........... ( -11.90, z-score = -0.83, R) >dp4.chrXR_group6 3751502 95 + 13314419 -------GCUCUCGCUCUCGCCCUCGC--------------CCUCCCCCCUCCACAGUCUUCUAAUUGAGAAUCCUUUAUGGUAUUUUCAAUUGUUUCCAUUACGCUUCAAUUCAA -------((....((....))......--------------.....................(((((((((((((.....)).)))))))))))..........)).......... ( -12.60, z-score = -2.54, R) >droPer1.super_35 161313 88 - 973955 -------------GCCCUCGCCCUCGC--------------CC-ACUCCCUCCACAGUUUUCUAAUUGAGAAUCCUUUAUGGCAUUUUCAAUUGUUUCCAUUACGCUUCAAUUCAA -------------((....((....))--------------..-..................(((((((((((((.....)).)))))))))))..........)).......... ( -11.70, z-score = -2.27, R) >droWil1.scaffold_180698 3395887 92 - 11422946 -------GCCCCUGUCUCUCUUCC-----------------CUCACUCCGUUUUUCUUGCCAUAAUUGAGAAUCCUUUCUGGCAUUCUCAAUUGUUUCCAUUACGCUUCAAUUCCU -------.................-----------------.......(((......((..((((((((((((((.....)).))))))))))))...))..)))........... ( -14.70, z-score = -4.11, R) >droVir3.scaffold_13049 631797 98 - 25233164 -------AGCCAAGUUCUCGGCAUCGU----------UUUGAGUGCGUCUGGGGCUGCGCUCUAAUUGAGAAUCCUUUAUGGCA-UUUCAAUUGUUUCCAUUACGCUUCAAUUCGA -------.(((........))).(((.----------.(((((.((((.((((((...))).(((((((((..((.....))..-)))))))))...)))..)))))))))..))) ( -27.40, z-score = -1.48, R) >droMoj3.scaffold_6680 24168050 100 + 24764193 -------AGCCAAGUUCUCGGCAGCCUC--------GUUGGAGUGCGUCUGGGGCUGCGCUCUAAUUGAGAAUCCUUUAUGGCA-UUUGAAUUGUUUCCAUUACGCUUCAACUGCG -------.(((........)))...(((--------((((((((((((.....)).))))))))).))))...........(((-.(((((.(((.......))).))))).))). ( -31.00, z-score = -1.15, R) >droGri2.scaffold_15110 1874272 88 - 24565398 -------AGCCAAGUUCUCGGCUUC-------------------GCGUCU-GGGCAAGACUCUAAUUGAGAAUCCUUUAUGGUA-UUUCAAUUGUUUCCAUUACGCUUCAAUUCGA -------((((........))))..-------------------((((.(-(((...(((...((((((((..((.....))..-)))))))))))))))..)))).......... ( -19.50, z-score = -0.96, R) >consensus _______UCCCUCGUCCUCCGCCCCGC______________CCCCCGCCCCUCACCACCCUCUAAUUGAGAAUCCUUUAUGGCAGUUUCAAUUGUUUCCAUUACGCUUCAAUUCCA ..............................................................(((((((((..((.....))...)))))))))...................... ( -7.81 = -7.82 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:06:35 2011