| Sequence ID | dm3.chr3L |
|---|---|
| Location | 6,078,516 – 6,078,658 |
| Length | 142 |
| Max. P | 0.866554 |
| Location | 6,078,516 – 6,078,658 |
|---|---|
| Length | 142 |
| Sequences | 5 |
| Columns | 145 |
| Reading direction | reverse |
| Mean pairwise identity | 70.80 |
| Shannon entropy | 0.52896 |
| G+C content | 0.45103 |
| Mean single sequence MFE | -35.84 |
| Consensus MFE | -20.14 |
| Energy contribution | -22.70 |
| Covariance contribution | 2.56 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.866554 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 6078516 142 - 24543557 CACCACC-AAACGUAGACACACAUUCGCAGUUGGUGCAGGGCUGCGUCAGGAUGUCGUCCUGCCACCAACAAGUGUGUCAGGAUU-GGCUUUGAAAACCACUGAAGGUGUCAUUCAAACUUAAAUGAAAUUUCUGAUU-UUAUCG .....((-((.(.(.(((((((.((....(((((((((((((.((((....)))).)))))).))))))))))))))))).).))-)).((((((.(((......)))....)))))).....((((((((...))))-)))).. ( -44.00, z-score = -2.00, R) >droAna3.scaffold_13337 2430586 120 + 23293914 CGCCAC--AGACACACAUUCGCAUUCACAGUUGGUGCAGGACAUUAUCAGGAUGUAG---GGACAGUGGAAAAUAUUUC-CAAUUUAGUUUCAAACAUUACCAAA-------UUAACUUCUAAAUUAUUUUUA------------ ......--....................(((((((...(((((((.....))))).(---..((..(((((.....)))-)).....))..)........))..)-------))))))...............------------ ( -16.40, z-score = 0.38, R) >droEre2.scaffold_4784 8776783 136 - 25762168 CACCCCC-CAGCGGAGGCACACACUCGCAGUUGGUGCAGGACUGCGUCAGGAUGUCGUCCUGCCACCAACAAGUGCGUCGCAA-------UUGGAAACUACUGAAGGAGUCAUUUAAGCUUAAAUCAUAUUUACGUUU-UUAUCG .......-..((((..((((.(....)..(((((((((((((.((((....)))).)))))).)))))))..)))).))))..-------.(((((((((.(((..((((.......))))...)))....)).))))-)))... ( -39.70, z-score = -1.31, R) >droYak2.chr3L 6660700 145 - 24197627 CACCCCCAAAACGGAGGCACACACUCGCAGUUGGUGCAGGCCUGCGUCAGGAUGUCCUCCUGCCACCAACAAGUGCGUCCCUAUUCCAUUUUUAAAACCACUGAAGGUGUCCUUUAAGCUUAAAUCUAAUUUCCGUUUACUAUCG ........(((((((((.((.((((....(((((((((((...((((....))))...)))).))))))).)))).)).)).....((((((((.......))))))))......................)))))))....... ( -38.50, z-score = -2.32, R) >droSec1.super_2 6026914 142 - 7591821 CACCACC-AAACGUAGACACACAUUCGCAGUUGGUGCAGGGCUGCGUCAGGAUGUCGUCCUGCCACCAACAAGUGCGUCAGGAUU-GGCUUUGAAAACCACUGAAGGUGUCAUUCAAACUUAAAAUAAAUUUCUGUUU-UUAUCG .......-.......(((((...(((...(((((((((((((.((((....)))).)))))).))))))).((((..(((((...-...)))))....))))))).)))))...........................-...... ( -40.60, z-score = -1.52, R) >consensus CACCACC_AAACGGAGACACACAUUCGCAGUUGGUGCAGGACUGCGUCAGGAUGUCGUCCUGCCACCAACAAGUGCGUCACAAUU_GGCUUUGAAAACCACUGAAGGUGUCAUUCAAACUUAAAUCAAAUUUCCGUUU_UUAUCG ...............(((((...(((...(((((((((((((.((((....)))).)))))).))))))).((((.......................))))))).))))).................................. (-20.14 = -22.70 + 2.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:06:32 2011