| Sequence ID | dm3.chr3L |
|---|---|
| Location | 6,060,097 – 6,060,196 |
| Length | 99 |
| Max. P | 0.516187 |
| Location | 6,060,097 – 6,060,196 |
|---|---|
| Length | 99 |
| Sequences | 7 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 71.98 |
| Shannon entropy | 0.52282 |
| G+C content | 0.43569 |
| Mean single sequence MFE | -20.63 |
| Consensus MFE | -8.15 |
| Energy contribution | -10.79 |
| Covariance contribution | 2.64 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.516187 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 6060097 99 - 24543557 GCCACCUACGAUCGACUACGGGU---AUUAUUCAC-AACACAUUUGAAUAUUUAUGGCACACAUAACGUGCAUUA-----------CGCGCUCAACUGCGGAUGCCAUAACCGA ..................(((..---..((((((.-........)))))).((((((((..(.....(((.....-----------)))((......)))..))))))))))). ( -21.70, z-score = -1.63, R) >dp4.chrXR_group6 3697490 83 + 13314419 ---------------------GU-AAAUAAUCAACUUUUCCAUUUGCAUAUUUAUGAC--AGAUUACGUGAAGCC------GAGCUUGAGUUUGA-AGCCCGCCCCACAGCCAA ---------------------..-.................((((((((....))).)--))))...(((..((.------(.((((.......)-)))).))..)))...... ( -11.70, z-score = -0.52, R) >droAna3.scaffold_13337 16755544 108 - 23293914 ---GCCACUAAUCAACAACAUACUUGAUUAUACAC-AACACAUUUGAAUAUUUAUGGC--ACAUUACGUGAAUUACUGAGCUAAGCCGAGCUCAACUGCGGAUGCCAUAACCAA ---.....(((((((........))))))).....-...............(((((((--(.....(((.......((((((......))))))...)))..)))))))).... ( -20.90, z-score = -2.55, R) >droEre2.scaffold_4784 8756792 96 - 25762168 ---GCCACCGCUCAAUUACGGGU---AUUAUUCAC-AGCACAUUUGAAUAUUUAUGGCACACAUAACGUGAAUUA-----------CGCGCCUAACUGCGGAUGCCAUAACCGA ---...............(((..---..((((((.-........)))))).(((((((((((.....))).....-----------((((......))))..))))))))))). ( -22.10, z-score = -1.32, R) >droYak2.chr3L 6641925 96 - 24197627 ---GCCACCGAUCAACUACGGGU---AUUGUUCAC-AACACAUUUGAAUAUUUAUGGCACACAUAACGUGAAUUA-----------CGCGCCUAACUGCGGAUGGCAUAACCGA ---(((((((........((.((---(..((((((-..((....)).....(((((.....))))).))))))))-----------).))........))).))))........ ( -23.59, z-score = -1.78, R) >droSec1.super_2 6009084 99 - 7591821 GCCACCUACGAUCGACUACGGGU---AUUAUUCAC-AACACAUUUGAAUAUUUAUGGCACACAUAACGUGAAUUA-----------AGCGCUCAGCUGCGGAUGCCAUAACCGA ..................(((..---..((((((.-........)))))).(((((((((((.....))).....-----------..(((......)))..))))))))))). ( -22.20, z-score = -1.60, R) >droSim1.chr3L 5562462 99 - 22553184 GCCACCUACGAUCGACUACGGGU---AUUAUUCAC-AACACAUUUGAAUAUUUAUGGCACACAUAACGUGAAUUA-----------CGCGCUCAACUGCGGAUGCCAUAACCGA ..................(((..---..((((((.-........)))))).(((((((((((.....))).....-----------..(((......)))..))))))))))). ( -22.20, z-score = -2.13, R) >consensus ___ACCAACGAUCAACUACGGGU___AUUAUUCAC_AACACAUUUGAAUAUUUAUGGCACACAUAACGUGAAUUA___________CGCGCUCAACUGCGGAUGCCAUAACCGA ..................(((.......((((((..........)))))).(((((((((((.....)))..................(((......)))..))))))))))). ( -8.15 = -10.79 + 2.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:06:29 2011