| Sequence ID | dm3.chr3L |
|---|---|
| Location | 6,043,378 – 6,043,471 |
| Length | 93 |
| Max. P | 0.730389 |
| Location | 6,043,378 – 6,043,471 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 67.32 |
| Shannon entropy | 0.55694 |
| G+C content | 0.41776 |
| Mean single sequence MFE | -25.48 |
| Consensus MFE | -6.48 |
| Energy contribution | -7.15 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.45 |
| Mean z-score | -2.61 |
| Structure conservation index | 0.25 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.730389 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 6043378 93 - 24543557 ----UUGCCAAACGGACGACU-UUGGCUGACU--UUUGCUCUGUUUUAAGGCAU-------AUACAUGCAUAUUUAUAGCU-GGGAAAACCGGCUAAGCGAAAUCGGU---- ----..((((((.(.....))-)))))(((.(--((((((..........((((-------....)))).......(((((-((.....)))))))))))))))))..---- ( -27.70, z-score = -2.74, R) >droVir3.scaffold_13049 3925973 98 - 25233164 ----UGGCAUCACACAUUCCUCUUUUCCGCCUGAUACACACAGUUUCACAAC---------GCAAAUAUGCCUUUAUCUUU-AUGGGUACAGGGUAGACGAAUUUUUUGCAA ----..(((......((((.(((..(((((.(((.((.....)).)))....---------)).....(((((.((....)-).)))))..))).))).))))....))).. ( -17.00, z-score = -0.41, R) >droEre2.scaffold_4784 8740479 85 - 25762168 ----UAGCCAAACGGACGACU-UUGGCUGACU--UUUGCACUGGUUU---------------UGGGUGAAUAUUUAUAGCU-GGAAAAACCGGCUAAGCGAAAUCGGU---- ----((((((((.(.....))-)))))))...--.....((((((((---------------((.((((....))))((((-((.....))))))...))))))))))---- ( -26.10, z-score = -2.80, R) >droYak2.chr3L 6624348 105 - 24197627 UUUUUGACAAAAUGGACGACA-UUGGCUGACU--UUUGCACUGCUUUAAGGUACUACAAGAAUGUGUACGUAUUUACAGCUGGGGAAAACCGGCUAAGCGAAAUCGGU---- ..........((((.....))-)).(((((.(--(((((.........((((((((((......)))).))))))..((((((......))))))..)))))))))))---- ( -27.30, z-score = -1.97, R) >droSec1.super_2 5993145 91 - 7591821 ----UUGCCAAACGAACGACU-UUGGCUGACU--UUUGCUCUGCUUUAAGAU---------AUAAACGUAUAUUUAUAGCU-GGGAAAACCAGCUAAGCGAAAUCGGU---- ----..((((((........)-)))))(((.(--((((((........((((---------(((....))))))).(((((-((.....)))))))))))))))))..---- ( -26.80, z-score = -3.66, R) >droSim1.chr3L 5545547 91 - 22553184 ----UUGCCAAACGAACGACU-UUGGCUGACU--UUUGCUCUGCUUUAAGAU---------AUACACGUAUAUUUAUAGCU-GGGAAAACCAGCUAAGCGAAAUCGGU---- ----..((((((........)-)))))(((.(--((((((........((((---------(((....))))))).(((((-((.....)))))))))))))))))..---- ( -28.00, z-score = -4.09, R) >consensus ____UUGCCAAACGGACGACU_UUGGCUGACU__UUUGCACUGCUUUAAGAU_________AUAAAUGUAUAUUUAUAGCU_GGGAAAACCGGCUAAGCGAAAUCGGU____ .........................(((((....(((((......................(((....))).....(((((.((.....))))))).))))).))))).... ( -6.48 = -7.15 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:06:28 2011