| Sequence ID | dm3.chr3L |
|---|---|
| Location | 6,027,418 – 6,027,509 |
| Length | 91 |
| Max. P | 0.516834 |
| Location | 6,027,418 – 6,027,509 |
|---|---|
| Length | 91 |
| Sequences | 10 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 60.80 |
| Shannon entropy | 0.78441 |
| G+C content | 0.52464 |
| Mean single sequence MFE | -23.00 |
| Consensus MFE | -11.46 |
| Energy contribution | -11.03 |
| Covariance contribution | -0.43 |
| Combinations/Pair | 1.58 |
| Mean z-score | -0.09 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.516834 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 6027418 91 - 24543557 GGUGGUGCGGUGGUUCAAUAAUAGCGAAUACAUGGGUACUAACUGCUGCUCAUUGCACCAAAGGGUGAGUAAUUUUU---UUAAAAAAUCGAUA---- ..((((((((((((((.........)))).....((((.....))))...))))))))))...(((...(((.....---)))....)))....---- ( -17.40, z-score = 0.43, R) >droSim1.chr3L 5531771 90 - 22553184 GGUGGUGCGGUGGUUCAAUAAUAGCGAAUACAUGGGUUCUAACUGCUGCCCAUUGCACCAAAGGGUGAGUAACUUU----UCUAAAAAUCGAUA---- ..(((((((((((........((((((((......)))).....)))).)))))))))))((((((.....)))))----).............---- ( -20.60, z-score = 0.06, R) >droSec1.super_2 5979977 90 - 7591821 GGUGGUGCGGUGGUUCAAUAAUAGCGAAUACAUGGGUUCUAACUGCUGCCCAUUGCACCAAAGGGUGAGUAACUUU----UCUAAAAAUCGAUA---- ..(((((((((((........((((((((......)))).....)))).)))))))))))((((((.....)))))----).............---- ( -20.60, z-score = 0.06, R) >droEre2.scaffold_4784 8726909 90 - 25762168 GGUGGUGCGGUGGUUCGAUCAUAGCAAAUAAAUGGGUUCUAACUGCUGCCCAUUGUACCAAAGGGUGAGCCACUUU----UCUCAAAACCUAUU---- (((..((.((((((((..............(((((((..........)))))))..(((....)))))))))))..----...))..)))....---- ( -25.60, z-score = -1.11, R) >droYak2.chr3L 6608872 90 - 24197627 GGUGGUGCGGUGGCUCCAUCAUCGGCAACUCCUGGGUGCUCACCGCUGCUCACUGCACCGACGGGUAAGAUAUCUCACUUUGUUUCUAUC-------- ...(((((((((((..(......(....).....(((....))))..)).)))))))))(((((((.((....)).)).)))))......-------- ( -26.80, z-score = -0.47, R) >droAna3.scaffold_12911 4680639 69 - 5364042 GGUGGUGCGGUGGCUCGAUCAUUGGCAACACCUGGGUACUGACCGCUGCUCACUGCACCAACGGCGCCG----------------------------- ..((((((((((((.((.(((..(....)((....))..))).))..)).)))))))))).((....))----------------------------- ( -25.40, z-score = -0.32, R) >dp4.chr2 848469 70 - 30794189 GGUGGUGCGGUGGCUCCAUCAUUGGCAACAGCUGGGUCCUGACCGCUGCUCACUGCACGAACGGCGCCGA---------------------------- ((((((((((((((..(..(((((....))).))(((....))))..)).))))))))......))))..---------------------------- ( -25.90, z-score = 0.32, R) >droPer1.super_7 3630874 70 - 4445127 GGUGGUGCGGUGGCUCCAUCAUUGGCAACACCUGGGUCCUGACCGCUGCUCACUGCACGAACGGCGCCGA---------------------------- (((((.((....)).))))).(((((........(((....)))((((.((.......)).)))))))))---------------------------- ( -24.90, z-score = 0.35, R) >droWil1.scaffold_180698 2122331 95 - 11422946 GGUGUGGCGGCAGUUUAAUAUC--CGAACA-AUAUGUCCUAACCGCUGCCCAUUGUGUGGAGGAGUAAGUAAUUCUAAAGCUUCCAAAUUGGUUCCAC ((((.((((((.(((..((((.--......-)))).....))).))))))))))..((((((((((.....))))).......((.....)).))))) ( -22.50, z-score = -0.24, R) >anoGam1.chr3R 8629902 70 - 53272125 AUCGGUGUGGAGGAUCUGUCCUGAACAGUAAGUGGGUCCUGACUGCCGCUCACUGUACUGAUGGUCUGCA---------------------------- ((((((....((((....))))..(((((.(((((((....))..))))).)))))))))))........---------------------------- ( -20.30, z-score = 0.06, R) >consensus GGUGGUGCGGUGGUUCAAUCAUAGCCAACACAUGGGUCCUAACCGCUGCUCACUGCACCAAAGGGUGAGA_A_UUU____U_U__AAAUC________ (((((.(((((((.............................))))))))))))............................................ (-11.46 = -11.03 + -0.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:06:24 2011