| Sequence ID | dm3.chr3L |
|---|---|
| Location | 5,987,755 – 5,987,846 |
| Length | 91 |
| Max. P | 0.988290 |
| Location | 5,987,755 – 5,987,846 |
|---|---|
| Length | 91 |
| Sequences | 12 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 79.70 |
| Shannon entropy | 0.39330 |
| G+C content | 0.46642 |
| Mean single sequence MFE | -33.20 |
| Consensus MFE | -13.12 |
| Energy contribution | -13.29 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.50 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.31 |
| SVM RNA-class probability | 0.988290 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 5987755 91 + 24543557 UUGAAGUGGC-ACCCGCAGUGC-GUGUUUGUAUUGCUUUUGAAUCGAAACUCGAUUGCGAAACAAAGGUCGAAAUGUGGAG--U-GGCACUUGAGA--------------- ((.(((((.(-(((((((...(-((.(((((.((((..((((........))))..)))).))))).).))...))))).)--)-).))))).)).--------------- ( -35.20, z-score = -4.12, R) >droSim1.chr3L 5483815 89 + 22553184 GUGAAGUGGC-ACCCGCAGUGC-GUGUUUGUAUUGCUUUUGAAUCGAAACUCGAUUGCGAAACAAAGGUCGAAAUGUGGAG--U-GGCACUUGA----------------- ...(((((.(-(((((((...(-((.(((((.((((..((((........))))..)))).))))).).))...))))).)--)-).)))))..----------------- ( -34.50, z-score = -3.91, R) >droSec1.super_2 5940947 89 + 7591821 GUGAAGUGGC-ACCCGCAGUGC-GUGUUUGUAUUGCUUUUGAAUCGAAACUCGAUUGCGAAACAAAGGUCGAAAUGUGGAG--U-GGCACUUGA----------------- ...(((((.(-(((((((...(-((.(((((.((((..((((........))))..)))).))))).).))...))))).)--)-).)))))..----------------- ( -34.50, z-score = -3.91, R) >droYak2.chr3L 6570303 89 + 24197627 GUGAAGUGGC-ACCCGCAGUGC-GUGUUUGUAUUGCUUUUGAAUCGAGACUCGAUUGCGAAACAAAGGUCGAAAUGUGGAG--U-GGCACUUGA----------------- ...(((((.(-(((((((...(-((.(((((.((((..((((........))))..)))).))))).).))...))))).)--)-).)))))..----------------- ( -34.50, z-score = -3.70, R) >droEre2.scaffold_4784 8686484 89 + 25762168 GUGAAGUGGC-ACCCGCAGUGC-GUGUUUGUAUUGCUUUUGAAUCGAAACUCGAUUGCGAAACAAAGGUCGAAAUGUGGAG--U-GGCACUUGA----------------- ...(((((.(-(((((((...(-((.(((((.((((..((((........))))..)))).))))).).))...))))).)--)-).)))))..----------------- ( -34.50, z-score = -3.91, R) >droAna3.scaffold_13337 16678407 92 + 23293914 CUGAAGUGGC-ACCCGCAGUGC-GUGUUUGUAUUGCUUUUGAAUUGAAACUCGAUUGCGAAACAAAGGUCGAACUGUGGAG--A-GGUACUUGAGGU-------------- ((.(((((.(-.((((((((.(-((.(((((.((((..((((........))))..)))).))))).).)).))))))).)--.-).))))).))..-------------- ( -34.50, z-score = -4.18, R) >dp4.chrXR_group6 3624123 89 - 13314419 GUGAAGUGGC-ACCCGCAGUGC-GUGUUUGUAUUGCUUUUGAAUUGAAACUCGAUUGCGAAACAAAGGUCGAGCUGUGGAG--A-GGCCCUUCA----------------- .(((((.(((-.((((((((.(-((.(((((.((((..((((........))))..)))).))))).).)).))))))).)--.-.))))))))----------------- ( -36.50, z-score = -4.20, R) >droPer1.super_35 35391 89 + 973955 GUGAAGUGGC-ACCCGCAGUGC-GUGUUUGUAUUGCUUUUGAAUUGAAACUCGAUUGCGAAACAAAGGUCGAGCUGUGGAG--A-GGCCCUUCA----------------- .(((((.(((-.((((((((.(-((.(((((.((((..((((........))))..)))).))))).).)).))))))).)--.-.))))))))----------------- ( -36.50, z-score = -4.20, R) >droWil1.scaffold_180698 7775656 95 - 11422946 GUGAAGUGGCUACCCGCAGUGCCAUGUUUGUAUUGCUUUUGAAUUGUAUUUCGAUUGCGAAACAAUGGCAACU-CAAAGUGGCA--GCACUUCAAGGC------------- .((((((((((((....((((((((...(((.((((..(((((......)))))..)))).)))))))).)))-....))))).--.)))))))....------------- ( -33.80, z-score = -2.89, R) >droVir3.scaffold_13049 3852876 91 + 25233164 UUGAAGUGGC-ACCCGCAGAGC-GUGUUUGUAUUGCAUUUGAAUUGAAACUCGAUUGCGAAACAAUGCGCACAACAAAGGUCCA-GGCACUCGA----------------- ((((.(((.(-(((......((-(((((.((.(((((.((((........)))).))))).)))))))))........)))...-).)))))))----------------- ( -23.34, z-score = 0.01, R) >droMoj3.scaffold_6654 2322380 92 - 2564135 UUGAGGUGAC-UCCCGCAGUGA-GUAUUUGUAUUGCUUUUCAAUUGGAACUCGAUUGCGAAACAAUACCCAAUGCUCGCACUCAUCACACUUGA----------------- .(((((((..-...))).((((-(((((.((((((.(((.((((((.....)))))).))).))))))..))))))))).))))..........----------------- ( -28.40, z-score = -3.54, R) >droGri2.scaffold_15110 13704368 107 - 24565398 UUGAAGUGGC-ACCCGCAGAGC-GUGUUUGUAUUGCUUUUGAAUUGAAACUCGAUUGCGAAACAAUGCGAACA-CAAAGGUCCA-CAAAAACCAACACACAAAACACUUGA .....((((.-(((.((...))-((((((((((((.((((((((((.....))))).))))))))))))))))-)...))))))-)......................... ( -32.10, z-score = -3.41, R) >consensus GUGAAGUGGC_ACCCGCAGUGC_GUGUUUGUAUUGCUUUUGAAUUGAAACUCGAUUGCGAAACAAAGGUCGAAAUGUGGAG__A_GGCACUUGA_________________ .....((((....))))..........((((.((((..((((........))))..)))).)))).............................................. (-13.12 = -13.29 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:06:18 2011