| Sequence ID | dm3.chr3L |
|---|---|
| Location | 5,962,640 – 5,962,693 |
| Length | 53 |
| Max. P | 0.832338 |
| Location | 5,962,640 – 5,962,693 |
|---|---|
| Length | 53 |
| Sequences | 7 |
| Columns | 62 |
| Reading direction | reverse |
| Mean pairwise identity | 69.39 |
| Shannon entropy | 0.52440 |
| G+C content | 0.35784 |
| Mean single sequence MFE | -13.09 |
| Consensus MFE | -4.65 |
| Energy contribution | -5.80 |
| Covariance contribution | 1.15 |
| Combinations/Pair | 1.41 |
| Mean z-score | -2.25 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.84 |
| SVM RNA-class probability | 0.832338 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 5962640 53 - 24543557 ---------CGACUAAAGUGUUGAGUUCUCCCACGUAAAGGUGAGAACUAUUUAAACAUUUU ---------.....((((((((.(((((((((.......)).))))))).....)))))))) ( -16.00, z-score = -3.78, R) >droSim1.chr3L 5458195 53 - 22553184 ---------CGACUAAAGUGUUGAGUUCUCCCACGUAAAGGUGAGAACUAUUUAAACAUUUU ---------.....((((((((.(((((((((.......)).))))))).....)))))))) ( -16.00, z-score = -3.78, R) >droSec1.super_2 5915961 53 - 7591821 ---------CGACUAAAGUGUUGAGUUCUCCCACGUAAAGGUGAGAACUAUUUAAACAUUUU ---------.....((((((((.(((((((((.......)).))))))).....)))))))) ( -16.00, z-score = -3.78, R) >droYak2.chr3L 6543572 53 - 24197627 ---------CGACUAAAGUGUUGAAUGGUGCCACGUAAAGGUGAGAACUAUUUAAGCAUUUU ---------.....(((((((((((((((.((((......))).).))))))).)))))))) ( -13.40, z-score = -2.66, R) >droEre2.scaffold_4784 8661488 53 - 25762168 ---------CGACUGAAGUGUUGAAUGGUCCCACGUAAAGGUGAGAAUUAUUUUAACAUUUU ---------.....(((((((((((...((.(((......))).)).....))))))))))) ( -12.00, z-score = -1.99, R) >dp4.chrXR_group6 3593995 62 + 13314419 CAGUUGCAGCAGUGGAAUUGCUACAAGUUUAAAGUCAAAAGCGAGCAUUAUUCAAAUAUUUU ....(((((((((...))))))....((((........))))..)))............... ( -7.80, z-score = 0.59, R) >droPer1.super_35 4685 62 - 973955 CAGUUGCAGCAGUGGAACUGCUACAAGUUUAAAGUCAAAAGCGAGCAUUAUUCAAAUAUUUU ....((((((((.....)))))....((((........))))..)))............... ( -10.40, z-score = -0.32, R) >consensus _________CGACUAAAGUGUUGAAUGCUCCCACGUAAAGGUGAGAACUAUUUAAACAUUUU ..............((((((((.(((((((((.......)).))))))).....)))))))) ( -4.65 = -5.80 + 1.15)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:06:17 2011