| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,409,297 – 4,409,399 |
| Length | 102 |
| Max. P | 0.822753 |
| Location | 4,409,297 – 4,409,399 |
|---|---|
| Length | 102 |
| Sequences | 7 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 81.17 |
| Shannon entropy | 0.35213 |
| G+C content | 0.45004 |
| Mean single sequence MFE | -22.81 |
| Consensus MFE | -18.36 |
| Energy contribution | -18.21 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.822753 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4409297 102 - 23011544 -------AAAUCCCGUUUUAUAUCUUCUGCUUGCAGAAAAUGUCUUUAUAGAGAUGGCCAAACUUUCACGACGUGCCUCGUCGUCUGCAGCAACGCCCUCCACAGCAAG -------....................((((.(((((....(((((....))))).............(((((.....))))))))))))))..((........))... ( -22.00, z-score = -1.29, R) >droSim1.chr2L 4333715 102 - 22036055 -------AUAUCCCGUUUUAUAUCUUCUGCUUGCAGAAAAUGUCUUUAUAGAGAUGGCCAAACUUUCACGACGUGCCUCGUCGUCUGCAGCAACGCCCUCCACAGCAAG -------....................((((.(((((....(((((....))))).............(((((.....))))))))))))))..((........))... ( -22.00, z-score = -1.29, R) >droSec1.super_5 2507577 102 - 5866729 -------AUAUCCCGUUUUAUAUCUUCUGCUUGCAGAAAAUGUCUUUAUAGAGAUGGCCAAACUUUCACGACGUGCCUCGUCGUCUGCAGCAACGCCCUCCACAGCAAG -------....................((((.(((((....(((((....))))).............(((((.....))))))))))))))..((........))... ( -22.00, z-score = -1.29, R) >droYak2.chr2L 4442801 98 - 22324452 -----------AUUAAUUGAUACCUUCUGCUUGCAGAAAAUGUCUUAAUAGAGAUGGCCAAACUUUCACGACGUGCCUCGUCGUCUGCAGCAACGCCCUCCACAGCAAG -----------................((((.(((((....(((((....))))).............(((((.....))))))))))))))..((........))... ( -21.90, z-score = -1.16, R) >droAna3.scaffold_12943 1596561 95 + 5039921 -------------AAAUAUUUAUUUCUCGUUU-CAGAAAAUGUUUCAAUAGAGAUGGCCAAACUUUCACGACGUGCCUCGUCGUCUGCAGCAACGCCGUCAACCGCCAC -------------.....((((((...(((((-....)))))....))))))((((((....((...((((((.....))))))....))....))))))......... ( -19.30, z-score = -0.85, R) >droPer1.super_8 3430419 109 + 3966273 AUACUAAUUCUAUUGUUGACUCUUUAUCGAUUGCAGAAAAUGUUUCAAUAGAGAUGGCAAAACUUUCACGACGUGCCUCGUCGUCUGCAGCAACGCCAUCAACAGCAAA ............((((((....(((((.((..(((.....))).)).)))))((((((....((...((((((.....))))))....))....))))))..)))))). ( -26.60, z-score = -1.87, R) >dp4.chr4_group3 2346787 109 + 11692001 AUACUAAUUCUUUUGUUGACUCUUUAUCGAUUGCAGAAAAUGUUUCAAUAGAGAUGGCAAAACUUUCACGACGUGCCUCGUCGUCUGCAGCAACGCCAUCCACAGCAAA ...........(((((((..(((((((.((..(((.....))).)).)))))))((((....((...((((((.....))))))....))....))))....))))))) ( -25.90, z-score = -1.65, R) >consensus _______AUAUCCCGUUUUAUAUCUUCUGCUUGCAGAAAAUGUCUUAAUAGAGAUGGCCAAACUUUCACGACGUGCCUCGUCGUCUGCAGCAACGCCCUCCACAGCAAG ............................(((.(((((....(((((....))))).............(((((.....)))))))))))))...((........))... (-18.36 = -18.21 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:16:23 2011