| Sequence ID | dm3.chr3L |
|---|---|
| Location | 5,875,284 – 5,875,334 |
| Length | 50 |
| Max. P | 0.909133 |
| Location | 5,875,284 – 5,875,334 |
|---|---|
| Length | 50 |
| Sequences | 6 |
| Columns | 50 |
| Reading direction | reverse |
| Mean pairwise identity | 88.67 |
| Shannon entropy | 0.22101 |
| G+C content | 0.42667 |
| Mean single sequence MFE | -8.63 |
| Consensus MFE | -6.41 |
| Energy contribution | -6.50 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.33 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.20 |
| SVM RNA-class probability | 0.909133 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 5875284 50 - 24543557 UAUUCUCAUAUUGUCCCAUUCAAUUGGGAAAAAGCAACUCUCCGCACUCG .............(((((......)))))....((........))..... ( -8.50, z-score = -2.46, R) >droSim1.chr3L 5368537 50 - 22553184 UAUUCUCAUAUUGUCCCAUUCAAUUGGGAAAAAGCAACUCUCCGCACUCG .............(((((......)))))....((........))..... ( -8.50, z-score = -2.46, R) >droSec1.super_2 5811138 50 - 7591821 UAUUCUCAUAUUGUCCCAUUCAAUUUGGAAAAAGCAACUCUCCGCACUCG ..(((.((.((((.......)))).)))))...((........))..... ( -4.90, z-score = -1.32, R) >droYak2.chr3L 6451816 50 - 24197627 UAUUCUCAUAUUGUCCCAUUCAAUUGGGAAAAAGCAACUCUCCGCACUCG .............(((((......)))))....((........))..... ( -8.50, z-score = -2.46, R) >droEre2.scaffold_4784 8570697 50 - 25762168 UAUUCUCAUAUUGUCCCAUUCAAUUGGGAAAAAGCAACUCUCCGCACUCG .............(((((......)))))....((........))..... ( -8.50, z-score = -2.46, R) >anoGam1.chr2L 6499246 50 + 48795086 UAUUCCCCGGUUCUCCUAUCAAACCGGGAGAUAGUAAAUCAACGCACUCG (((..(((((((.........)))))))..)))................. ( -12.90, z-score = -2.85, R) >consensus UAUUCUCAUAUUGUCCCAUUCAAUUGGGAAAAAGCAACUCUCCGCACUCG .............(((((......)))))....((........))..... ( -6.41 = -6.50 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:06:13 2011