| Sequence ID | dm3.chr3L |
|---|---|
| Location | 5,859,996 – 5,860,049 |
| Length | 53 |
| Max. P | 0.841384 |
| Location | 5,859,996 – 5,860,049 |
|---|---|
| Length | 53 |
| Sequences | 9 |
| Columns | 55 |
| Reading direction | reverse |
| Mean pairwise identity | 68.35 |
| Shannon entropy | 0.67589 |
| G+C content | 0.48851 |
| Mean single sequence MFE | -13.10 |
| Consensus MFE | -6.58 |
| Energy contribution | -5.83 |
| Covariance contribution | -0.75 |
| Combinations/Pair | 2.08 |
| Mean z-score | -0.87 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.87 |
| SVM RNA-class probability | 0.841384 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 5859996 53 - 24543557 --CCAGAGGUGAACUCAUGUCAACGCUUGGCUGAGUUCGCCGGCCAUUUCAGUUG --.....((((((((((.((((.....)))))))))))))).............. ( -20.30, z-score = -2.75, R) >droSim1.chr3L 5353181 53 - 22553184 --CCAGAGGUGAACUCAUGUCAACGCUUGGCUGAUUUCGCCGGCCAUUUCAGUUG --.....((((((.(((.((((.....))))))).)))))).............. ( -14.30, z-score = -0.84, R) >droSec1.super_2 5796276 53 - 7591821 --CCAGAGGUGAACUCAUGUCAACGCUUGGCUGAGUUCGCCCGCCAUUUCAGUUG --...(.((((((((((.((((.....)))))))))))))))............. ( -19.80, z-score = -3.06, R) >droYak2.chr3L 6435706 53 - 24197627 --CCAGAGGUGAACUCAUGUCAACGCUUGGCUGAGUUCGCUGGCCAUUUCAGUUG --.....((((((((((.((((.....)))))))))))))).............. ( -17.70, z-score = -1.68, R) >droEre2.scaffold_4784 8553619 53 - 25762168 --CCAGAGGUGAACUCAUGUCAACGCUUGGCUGAUUUCGCCGGCCAUUUCAGUUG --.....((((((.(((.((((.....))))))).)))))).............. ( -14.30, z-score = -0.84, R) >droAna3.scaffold_13337 10617712 53 + 23293914 --CCAGAAGUGAACUCAUGUCAACGCUUCGCUGAACUCACCUGGAAUUUCAUUUG --((((..((((..(((.((.........)))))..))))))))........... ( -9.00, z-score = -0.51, R) >droPer1.super_65 82726 53 + 397436 --CCAGAGGUGAACACAUGUCAACGCUUGGCUGAUUUUGCUCGGUAUUCCAGUUG --...((.(((....))).))(((.....(((((......)))))......))). ( -9.00, z-score = 0.96, R) >droVir3.scaffold_13047 7060177 53 + 19223366 --GAAAGUUUACCCUUAUCUUAACGCUUGAGUGAAGCUAGCUACUGUGUCGGUUG --.................(..((((...(((.......)))...))))..)... ( -5.40, z-score = 1.51, R) >droGri2.scaffold_15110 4291986 50 + 24565398 UUAUAAAUACCCAUAAAUAUUACGGAAUAGCGUAGGGUAUCUAAUAGCCG----- ...((.((((((........((((......)))))))))).)).......----- ( -8.10, z-score = -0.61, R) >consensus __CCAGAGGUGAACUCAUGUCAACGCUUGGCUGAGUUCGCCGGCCAUUUCAGUUG ........(((((.(((.((((.....))))))).)))))............... ( -6.58 = -5.83 + -0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:06:10 2011