| Sequence ID | dm3.chr3L |
|---|---|
| Location | 5,840,196 – 5,840,288 |
| Length | 92 |
| Max. P | 0.946262 |
| Location | 5,840,196 – 5,840,288 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 83.55 |
| Shannon entropy | 0.26311 |
| G+C content | 0.35606 |
| Mean single sequence MFE | -19.16 |
| Consensus MFE | -19.10 |
| Energy contribution | -19.26 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.29 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.52 |
| SVM RNA-class probability | 0.946262 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 5840196 92 - 24543557 UCUUUUAUUUUUUUUUUCUUCUGUCAGCUUCUUUUAUUGUUAUGCGCA---GUGCGUAGAACAAGUGGAAGCUUUGUUUGACAAUAACAACAACA .....................(((((((((((....(((((.(((((.---..))))).)))))..))))))......)))))............ ( -20.60, z-score = -1.84, R) >droPer1.super_65 60599 91 + 397436 ----CCAUUUGCCCAUUUUAUCGUCAGCUUCUUUUAUUGUUAUGCCUGCUUCUGCGUAGAACAAGUGGAAGCUUUGUUUGACAACAACAACAUCA ----..................((((((((((....(((((.(((..((....))))).)))))..))))))......))))............. ( -17.00, z-score = -0.50, R) >dp4.chrXR_group8 5678567 91 + 9212921 ----CCAUUUGCCCAUUUUAUCGUCAGCUUCUUUUAUUGUUAUGCCUGCUUCUGCGUAGAACAAGUGGAAGCUUUGUUUGACAACAACAACAUCA ----..................((((((((((....(((((.(((..((....))))).)))))..))))))......))))............. ( -17.00, z-score = -0.50, R) >droSim1.chr3L 5332897 91 - 22553184 UCUUUUA-UUUUUUUUUCUUCUGUCAGCUUCUUUUAUUGUUAUGCGCA---GUGCGUAGAACAAGUGGAAGCUUUGUUUGACAAUAACAACAACA .......-.............(((((((((((....(((((.(((((.---..))))).)))))..))))))......)))))............ ( -20.60, z-score = -1.81, R) >droSec1.super_2 5776669 90 - 7591821 UCUUUUA--UUUUUUUUCUUCUGUCAGCUUCUUUUAUUGUUAUGCGCA---GUGCGUAGAACAAGUGGAAGCUUUGUUUGACAAUAACAACAACA .......--............(((((((((((....(((((.(((((.---..))))).)))))..))))))......)))))............ ( -20.60, z-score = -1.81, R) >consensus UCUUUUAUUUUUUUUUUCUUCUGUCAGCUUCUUUUAUUGUUAUGCGCA___GUGCGUAGAACAAGUGGAAGCUUUGUUUGACAAUAACAACAACA ......................((((((((((....(((((.(((((......))))).)))))..))))))......))))............. (-19.10 = -19.26 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:06:08 2011