| Sequence ID | dm3.chr3L |
|---|---|
| Location | 5,837,851 – 5,837,947 |
| Length | 96 |
| Max. P | 0.940077 |
| Location | 5,837,851 – 5,837,947 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 85.99 |
| Shannon entropy | 0.26126 |
| G+C content | 0.36444 |
| Mean single sequence MFE | -24.05 |
| Consensus MFE | -16.33 |
| Energy contribution | -16.00 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.36 |
| Mean z-score | -2.51 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.44 |
| SVM RNA-class probability | 0.940077 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 5837851 96 + 24543557 ------UAUACGCAUAUAUAUCUUCUACUUUGGCUUUGGCUAGAUAUAUGUGCAAUACAUAUAUACCCGCAUCUGCUGAUGUAUUUGUGCACCUUUUCGAUG ------.....((((((((((((........(((....)))))))))))))))..((((.(((((.(.((....)).).))))).))))............. ( -23.30, z-score = -2.43, R) >droSim1.chr3L 5330506 96 + 22553184 ------UAUACGCAUAUAUAUCUUCUACUUUGGCUUUGGCUAGAUAUAUGUGCAAUACAUAUAUACCCGCAUCUGCUGAUGUAUUUGUGCACCUUUUCGAUG ------.....((((((((((((........(((....)))))))))))))))..((((.(((((.(.((....)).).))))).))))............. ( -23.30, z-score = -2.43, R) >droSec1.super_2 5774293 96 + 7591821 ------UAUACGCAUAUAUAUCUUCUACUUUGGCUUUGGCUAGAUAUAUGUGCAAUACAUAUAUACCCGCAUCUGCUGAUGUAUUUGUGCACCUUUUCGAUG ------.....((((((((((((........(((....)))))))))))))))..((((.(((((.(.((....)).).))))).))))............. ( -23.30, z-score = -2.43, R) >droYak2.chr3L 6411331 102 + 24197627 UAUACGCAUAUAUAUAUAUAUCUUCUACUUUGGCUUUGGUUAGAUAUAUGUGCAAUACAUAUAUACCCGCAUCUGUUGGUGUAGUUGUGCACCUUUUCGUUG .....(((((..(((((((((((...(((........))).))))))))))).........((((((.((....)).))))))..)))))............ ( -23.90, z-score = -1.32, R) >droEre2.scaffold_4784 8530754 96 + 25762168 ------UAUACGCAUGUAUAUCUUCUACUUUGGCUUUGGCUAGAUAUAUAUGCAAUACAUAUAUACCCGCAUCUGUUUGUGUAUUUGUGCACCUUUUCGAUG ------.....((((((((((((........(((....)))))))))))))))..((((.((((((..((....))..)))))).))))............. ( -24.00, z-score = -2.78, R) >droAna3.scaffold_13337 10592326 91 - 23293914 ------UAUACGCAUAGAUAUAU----CUUCUACUUUGGCUAGAUAUAUGCAUA-CACGUAUAUACCCGCAUCUGGCUAUGUAUCUGUGCACCUUUCGUCUG ------.....((((((((((((----..........((((((((((((((...-...)))))))......)))))))))))))))))))............ ( -26.50, z-score = -3.67, R) >consensus ______UAUACGCAUAUAUAUCUUCUACUUUGGCUUUGGCUAGAUAUAUGUGCAAUACAUAUAUACCCGCAUCUGCUGAUGUAUUUGUGCACCUUUUCGAUG ..........((((.(((((((......((((((....))))))((((((((.....))))))))............))))))).))))............. (-16.33 = -16.00 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:06:03 2011