Locus 6351

Sequence ID dm3.chr3L
Location 5,828,677 – 5,828,774
Length 97
Max. P 0.882506
window8734

overview

Window 4

Location 5,828,677 – 5,828,774
Length 97
Sequences 4
Columns 97
Reading direction reverse
Mean pairwise identity 92.27
Shannon entropy 0.13003
G+C content 0.50550
Mean single sequence MFE -28.65
Consensus MFE -26.81
Energy contribution -27.50
Covariance contribution 0.69
Combinations/Pair 1.08
Mean z-score -1.58
Structure conservation index 0.94
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.05
SVM RNA-class probability 0.882506
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 5828677 97 - 24543557
UCAGCGCGUGUUGGCCUUUUUGGUUCCCAAGCUUUGUUUGGCCCACACAGACAGACACUCUACUCUGUCCGCGUAUAUGCAUGUGUGCUCUUACACU
...((((((((.((((.....(((......)))......)))).)))).((((((........)))))).))))........(((((....))))). ( -31.10, z-score =  -2.40, R)
>droSim1.chr3L 5321347 97 - 22553184
UCAGCGCGUGUUGGCCUUUUUGGUUCCCAAGCUUUGUUUGGCCCACACAGACAGACACUCUACUCUGUCCGCGUAUUGGUAUGUGUGCUCUUACACU
...((((((((.((((.....(((......)))......)))).)))).((((((........)))))).))))........(((((....))))). ( -31.10, z-score =  -2.11, R)
>droSec1.super_2 5765267 97 - 7591821
UCAGCGCGUGUUGGCCUUUUUGGUUCCCAAGCUUUGUUUGGCCCACACAGACAGACACUCUACUCUGUUCGCGUAUUGGUAUGUGUGCUCUUACACU
...((((((((.((((.....(((......)))......)))).)))).((((((........)))))).))))........(((((....))))). ( -28.90, z-score =  -1.45, R)
>droEre2.scaffold_4784 8521526 89 - 25762168
UCAGCGCGUGUUGGCCUUUUUGGUUCCCAAGCUUUGUUUGGCCCACACA----GACACUCAACUCUGGCCGUGUAUC----UGUGUGCUCUUACACU
..(((((((((.((((.....(((......)))......)))).)))).----.(((((((....)))..))))...----...)))))........ ( -23.50, z-score =  -0.35, R)
>consensus
UCAGCGCGUGUUGGCCUUUUUGGUUCCCAAGCUUUGUUUGGCCCACACAGACAGACACUCUACUCUGUCCGCGUAUUGGUAUGUGUGCUCUUACACU
...((((((((.((((.....(((......)))......)))).)))).((((((........)))))).))))........(((((....))))). (-26.81 = -27.50 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:06:01 2011