| Sequence ID | dm3.chr3L |
|---|---|
| Location | 5,827,919 – 5,828,020 |
| Length | 101 |
| Max. P | 0.666406 |
| Location | 5,827,919 – 5,828,020 |
|---|---|
| Length | 101 |
| Sequences | 7 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 80.41 |
| Shannon entropy | 0.39575 |
| G+C content | 0.42348 |
| Mean single sequence MFE | -20.06 |
| Consensus MFE | -11.32 |
| Energy contribution | -12.43 |
| Covariance contribution | 1.11 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.666406 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 5827919 101 - 24543557 AAAUGUUGCUAUUCUGCCGCAAAAUAUUUUCACACACACGAAAAUGAUUUCAACUUGCCACCAGCAACCAUAAUAACAGCUAACAGCGGCAACAAGUGGCC .......((((((.((((((....(((((((........)))))))........((((.....))))..................))))))...)))))). ( -22.70, z-score = -2.27, R) >droSim1.chr3L 5320601 101 - 22553184 AAAUGUUGCUAUUCUGCCGCAAAAUAUUUUCACACACACGAAAAUGAUUUCAACUUGCCACCAGCAACCAUAAUAACAGCUAACAGAGGCAACAAGUGGCC ...(((((((..((((..((....(((((((........)))))))........((((.....))))...........))...)))))))))))....... ( -20.20, z-score = -1.62, R) >droSec1.super_2 5764520 101 - 7591821 AAAUGUUGCUAUUCUGCCGCAAAAUAUUUUCACACACACGAAAAUGAUUUCAACUUGCCACCAGCAACCAUAAUAACAGCUAACAGCGGCAACAAGUGGCC .......((((((.((((((....(((((((........)))))))........((((.....))))..................))))))...)))))). ( -22.70, z-score = -2.27, R) >droYak2.chr3L 6399922 101 - 24197627 AAUUGUUACUAUUCUGCCGCAAAAUAUUUUCACACACACGAAAAUGAUUUCAACUUGCCACCAGCAACCAUAAUAACAGCUAACAGCGGCAACAAGUGGUC .......((((((.((((((....(((((((........)))))))........((((.....))))..................))))))...)))))). ( -20.50, z-score = -2.30, R) >droEre2.scaffold_4784 8520808 94 - 25762168 AGUUGUUACUAUUCUGCCGCAAAAUAUUUUCACACACACGAAAAUGAUUUCAACUUGCCACCAGCAACCAUAAUAACAGC-------GGCAACAAGUGGCC ....((((((....((((((....(((((((........)))))))........((((.....))))...........))-------))))...)))))). ( -22.50, z-score = -2.99, R) >droAna3.scaffold_13337 10581644 97 + 23293914 AAAUGGUAGCGAGAUGCCGCAAAAUAUUUUCACACAGACGAAAAUGAUUUCAAGUUGCCACCAGCGGGCAUAAUAACAGA----AGCAGCAACAAGUGGCC ....(((.((..(.(((.((....(((((((........))))))).........((((.......))))..........----.)).))).)..)).))) ( -19.30, z-score = -0.29, R) >droVir3.scaffold_13049 15488372 91 + 25233164 GCUCGCCUCGCGCCCAUUUCAAAAUAUUUUCACACACAC---AAUUAUUUCAACUUGCCACCACCAGCAGCAGCAAUAAC-----AAGUUGCCAGGCUG-- ....((((...............................---.............(((........)))(((((......-----..))))).))))..-- ( -12.50, z-score = -0.40, R) >consensus AAAUGUUACUAUUCUGCCGCAAAAUAUUUUCACACACACGAAAAUGAUUUCAACUUGCCACCAGCAACCAUAAUAACAGCUAACAGCGGCAACAAGUGGCC ....((((((....((((((....(((((((........)))))))........((((.....))))..................))))))...)))))). (-11.32 = -12.43 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:06:00 2011