| Sequence ID | dm3.chr3L |
|---|---|
| Location | 5,783,311 – 5,783,412 |
| Length | 101 |
| Max. P | 0.883937 |
| Location | 5,783,311 – 5,783,412 |
|---|---|
| Length | 101 |
| Sequences | 8 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 91.28 |
| Shannon entropy | 0.17010 |
| G+C content | 0.31675 |
| Mean single sequence MFE | -20.45 |
| Consensus MFE | -13.25 |
| Energy contribution | -13.50 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.83 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.06 |
| SVM RNA-class probability | 0.883937 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 5783311 101 + 24543557 -UGUUCGUACAUUUAGUUUUCAAAUGAAAUCAUUUAAAAAUAG--UUUGAUUUACAAAAACUAGAAGCUACAUAA--AAACCGCGUCACGAUCUC-GCGGCACUCAU -.....((((.(((((((((....((((((((...........--..)))))).))))))))))).).)))....--...(((((.........)-))))....... ( -18.32, z-score = -1.91, R) >droPer1.super_50 551969 102 - 557249 -AGUUCGUACAUUUAGUUU-CAAAUUAAAUCAUUUAAAAAUAG--UUUGAUUUACAAAAACUAGAAGCUACAUAAAAAAGCCGCGACGAAGUCUC-GCGGAACUCAU -(((((((((.((((((((-.(((((((((.(((....))).)--))))))))....)))))))).).)))..........(((((.(....)))-))))))))... ( -22.10, z-score = -3.13, R) >dp4.chrXR_group8 9202607 102 + 9212921 -AGUUCGUACAUUUAGUUU-CAAAUUAAAUCAUUUAAAAAUAG--UUUGAUUUACAAAAACUAGAAGCUACAUAAAAAAGCCGCGACGAAGUCUC-GCGGAACUCAU -(((((((((.((((((((-.(((((((((.(((....))).)--))))))))....)))))))).).)))..........(((((.(....)))-))))))))... ( -22.10, z-score = -3.13, R) >droAna3.scaffold_13337 10536765 107 - 23293914 UUUUUCGUACAUUUAGUUUCCAAAUUAAAUCAUUUAAAAAUAGAGUUUGAUUUACAAAAACUAGAAGCUAAAUAAAAAAACCGCGAUAAGUUCUCCGCGGCACUCAU ..........((((((((((.....(((((((...............))))))).........)))))))))).......(((((..........)))))....... ( -17.90, z-score = -2.17, R) >droEre2.scaffold_4784 8473952 100 + 25762168 -UGUUCGUACAUUUAGUUUUCAA-UUAAAUCAUUUAAAAAUAG--UUUGAUUUACAAAAACUAGAAGCUACAUAA--AAACCGCGUCACGAUCUC-GCGGCACUCAU -.....((((.(((((((((...-.(((((((...........--..)))))))..))))))))).).)))....--...(((((.........)-))))....... ( -19.12, z-score = -2.80, R) >droYak2.chr3L 6353924 101 + 24197627 -UGUUCGUACAUUUAGUUUUCAAAUUAAAUCAUUUAAAAAUAG--UUUGAUUUACAAAAACUAGAAGCUACAUAA--AAACCGCGACACGAUCUC-GCGGCACUCAU -.....((((.(((((((((.(((((((((.(((....))).)--))))))))...))))))))).).)))....--...((((((.......))-))))....... ( -21.40, z-score = -3.62, R) >droSec1.super_2 5720153 98 + 7591821 -UGUUCGUACAUUUAGUUUUCAAAUUAAAUCAUUUAAAAAUAG--UUUGAUUUACAAAAACUAGAAGCUACA-----AAACCGCGUGACGAUCUC-GCGGCACUCAU -.....((((.(((((((((.(((((((((.(((....))).)--))))))))...))))))))).).))).-----...(((((.(.....).)-))))....... ( -21.50, z-score = -3.00, R) >droSim1.chr3L_random 284555 101 + 1049610 -UGUUCGUACAUUUAGUUUUCAAAUUAAAUCAUUUAAAAAUAG--UUUGAUUUACAAAAACUAGAAGCUACAUAA--AAACCGCGCGACGAUCUC-GCGGCACUCAU -.....((((.(((((((((.(((((((((.(((....))).)--))))))))...))))))))).).)))....--...(((((.(.....).)-))))....... ( -21.20, z-score = -2.89, R) >consensus _UGUUCGUACAUUUAGUUUUCAAAUUAAAUCAUUUAAAAAUAG__UUUGAUUUACAAAAACUAGAAGCUACAUAA__AAACCGCGACACGAUCUC_GCGGCACUCAU ......((((.((((((((......(((((((...............)))))))...)))))))).).))).........((((............))))....... (-13.25 = -13.50 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:05:59 2011