| Sequence ID | dm3.chr3L |
|---|---|
| Location | 5,768,975 – 5,769,087 |
| Length | 112 |
| Max. P | 0.979117 |
| Location | 5,768,975 – 5,769,087 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 85.45 |
| Shannon entropy | 0.25209 |
| G+C content | 0.39101 |
| Mean single sequence MFE | -29.12 |
| Consensus MFE | -18.66 |
| Energy contribution | -19.82 |
| Covariance contribution | 1.16 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.86 |
| SVM RNA-class probability | 0.836747 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 5768975 112 + 24543557 UUUCAUUGAAUCGGUAUCCUUGCAUCAAUCGCGUGCUGGCGAUACCGCUUUAAUGACGCCAAUAAUCAGACAA----CAAGGUUACCGCUCUAAUGUUUCAUUUUUAAAAAAUGUU ..((((((((.(((((((((.((((.......)))).)).))))))).)))))))).((...(((((......----...)))))..))..........(((((.....))))).. ( -25.60, z-score = -1.79, R) >droSim1.chr3L 5280723 112 + 22553184 UUGCAUUGGAUCGGUAUCCUUGCACCAAUCGGGUUCUGGGGAUACCGUUUUAAUGACGCCAAUAAUCAAGCAA----CAAGGUUACCGCUCUAAUGUUUCAUUUUUAAAAAAUGUU ..((((((((.(((((.(((((..((....))(((.(((..((..((((.....))))...))..))))))..----))))).))))).))))))))..(((((.....))))).. ( -29.30, z-score = -1.87, R) >droSec1.super_2 5705819 112 + 7591821 UUGCAUUGGAUCGGUAUCCUUGCACCAAUCGGGUGCUGGGGAUACCGCUUUAAUGGCGCCAAUAAUCAAGCAA----CAAGGUUACCGCUCUAAUGUUUCAUUUUUAAAAAAUGUU ..((((((((..((((((((((((((.....))))).)))))))))(((.....)))((...(((((......----...)))))..))))))))))..(((((.....))))).. ( -34.90, z-score = -2.67, R) >droEre2.scaffold_4784 8459568 116 + 25762168 UUACACUGCAGCGGCAACCUUGCAUCCAUUGGGCACUAAGGAUACCGCUUUAAUGACGCCAACAAUCAGAAAAAACACAAGGUUACCGCUCUAAUGUUUCAUUUUUAAAAAAUGUU ..(((.((.(((((.(((((((......(((((((.(((((......))))).)).).))))......(......).))))))).))))).)).)))..(((((.....))))).. ( -24.50, z-score = -1.33, R) >droYak2.chr3L 6338458 116 + 24197627 UUACACUGAAGCGGUAACCUUGCAUCCAAUGGAAACAAAGGAUACCGCUUUAAUGACGCCAGUAAUCAGAAAACAAACAAGGUUACCGCUCUAAUGUUUCAUUUUAAAAAAAUGUU ..(((.((.(((((((((((((.((((..((....))..))))...((.........))..................))))))))))))).)).)))..(((((.....))))).. ( -31.30, z-score = -4.24, R) >consensus UUACAUUGAAUCGGUAUCCUUGCAUCAAUCGGGUACUGGGGAUACCGCUUUAAUGACGCCAAUAAUCAGACAA____CAAGGUUACCGCUCUAAUGUUUCAUUUUUAAAAAAUGUU ...(((((((.(((((((((((.(((.....))).).)))))))))).)))))))..((...(((((.............)))))..))..........(((((.....))))).. (-18.66 = -19.82 + 1.16)
| Location | 5,768,975 – 5,769,087 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 85.45 |
| Shannon entropy | 0.25209 |
| G+C content | 0.39101 |
| Mean single sequence MFE | -33.46 |
| Consensus MFE | -21.62 |
| Energy contribution | -20.94 |
| Covariance contribution | -0.68 |
| Combinations/Pair | 1.23 |
| Mean z-score | -3.01 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.01 |
| SVM RNA-class probability | 0.979117 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 5768975 112 - 24543557 AACAUUUUUUAAAAAUGAAACAUUAGAGCGGUAACCUUG----UUGUCUGAUUAUUGGCGUCAUUAAAGCGGUAUCGCCAGCACGCGAUUGAUGCAAGGAUACCGAUUCAAUGAAA ..(((((.....)))))...((((.((((((((.(((((----(.(((.(....((((((..(((.....)))..))))))....))))....)))))).))))).)))))))... ( -30.50, z-score = -2.28, R) >droSim1.chr3L 5280723 112 - 22553184 AACAUUUUUUAAAAAUGAAACAUUAGAGCGGUAACCUUG----UUGCUUGAUUAUUGGCGUCAUUAAAACGGUAUCCCCAGAACCCGAUUGGUGCAAGGAUACCGAUCCAAUGCAA ..(((((.....)))))...((((.((.(((((.(((((----..(((........)))..((((((..(((..((....))..))).))))))))))).))))).)).))))... ( -26.80, z-score = -1.42, R) >droSec1.super_2 5705819 112 - 7591821 AACAUUUUUUAAAAAUGAAACAUUAGAGCGGUAACCUUG----UUGCUUGAUUAUUGGCGCCAUUAAAGCGGUAUCCCCAGCACCCGAUUGGUGCAAGGAUACCGAUCCAAUGCAA ..(((((.....)))))........((((..((....))----..))))...((((((.((.......))(((((((...(((((.....)))))..)))))))...))))))... ( -30.40, z-score = -1.91, R) >droEre2.scaffold_4784 8459568 116 - 25762168 AACAUUUUUUAAAAAUGAAACAUUAGAGCGGUAACCUUGUGUUUUUUCUGAUUGUUGGCGUCAUUAAAGCGGUAUCCUUAGUGCCCAAUGGAUGCAAGGUUGCCGCUGCAGUGUAA ..(((((.....)))))..(((((..((((((((((((((((((.........(((((.(.((((((..........))))))))))))))))))))))))))))))..))))).. ( -38.90, z-score = -3.72, R) >droYak2.chr3L 6338458 116 - 24197627 AACAUUUUUUUAAAAUGAAACAUUAGAGCGGUAACCUUGUUUGUUUUCUGAUUACUGGCGUCAUUAAAGCGGUAUCCUUUGUUUCCAUUGGAUGCAAGGUUACCGCUUCAGUGUAA ..(((((.....)))))..(((((..((((((((((((...((((((.((((.......))))..))))))((((((..((....))..))))))))))))))))))..))))).. ( -40.70, z-score = -5.72, R) >consensus AACAUUUUUUAAAAAUGAAACAUUAGAGCGGUAACCUUG____UUGUCUGAUUAUUGGCGUCAUUAAAGCGGUAUCCCCAGCACCCGAUUGAUGCAAGGAUACCGAUCCAAUGCAA ..(((((.....)))))...((((.((.(((((.((((....................(((.......)))((((((...(....)...)))))))))).))))).)).))))... (-21.62 = -20.94 + -0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:05:58 2011