| Sequence ID | dm3.chr3L |
|---|---|
| Location | 5,757,651 – 5,757,748 |
| Length | 97 |
| Max. P | 0.639218 |
| Location | 5,757,651 – 5,757,746 |
|---|---|
| Length | 95 |
| Sequences | 12 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 62.86 |
| Shannon entropy | 0.81944 |
| G+C content | 0.45925 |
| Mean single sequence MFE | -21.70 |
| Consensus MFE | -8.30 |
| Energy contribution | -8.00 |
| Covariance contribution | -0.30 |
| Combinations/Pair | 1.46 |
| Mean z-score | -0.76 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.639218 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 5757651 95 - 24543557 UCCUAUUCCACAUAUACCGCC---ACUAAAUACGUAAC-AU-UUCUUUUCUACAGCGAUCUGGGUGCCCACAUUGAUGGUUUCAUUGCCGUGGCCGCUCA ..................(((---((............-..-.............((((.(((....))).))))..(((......))))))))...... ( -18.00, z-score = -0.29, R) >droSim1.chr3L 5269412 95 - 22553184 UCUUAUUCCACAUAUACCGCC---ACAAAAUUCGUAAC-CA-UUCUUCUCUACAGUGAUCUGGGAGCCCACAUUGAUGGUUUCAUUGCCGUGGCCGCUCA ..................(((---((............-..-..........(((((...(((....))))))))..(((......))))))))...... ( -19.20, z-score = -0.70, R) >droSec1.super_2 5694486 95 - 7591821 UCUUAUUCCACAUAUACCGCC---ACAAAAUUCGUAAC-CA-UUCUUCUCUACAGUGAUCUGGGAGCCCACAUUGAUGGUUUCAUUGCCGUGGCCGCUCA ..................(((---((............-..-..........(((((...(((....))))))))..(((......))))))))...... ( -19.20, z-score = -0.70, R) >droEre2.scaffold_4784 8448220 95 - 25762168 UCUUAUUCCACAUAUACCGCC---ACUAAUUUGGUAAC-CU-UUCUUUUCUGCAGCGACCUGGGAGCCCACAUCGAUGGCUUUAUUGCCGUGGCCGCUCA ..................(((---((............-..-.............(((..(((....)))..)))..(((......))))))))...... ( -20.60, z-score = -0.35, R) >droYak2.chr3L 6327086 99 - 24197627 UCUUAUUCCACAUAUAUCGCCUAUACUAAGAUCGCAACACU-UUCUUUUCUAUAGUGACUUGGGAGCCCACAUUGAUGGUUUCAUUGCCGUGGCCGCUCA .........................(((((.((((......-............)))))))))((((((((..(((((....)))))..))))..)))). ( -19.07, z-score = -0.43, R) >droAna3.scaffold_13337 10510360 86 + 23293914 -------UAUUAUCUUUCUA----UUUGUUUU---CAUAAAUGUCUCUUUCUUAGUGACUUGGGCGCUCAUAUCGAUGGCUUCAUUGCAGUGGCCGCCCA -------............(----(((((...---.))))))(((.((.....)).))).((((((..(((..(((((....)))))..)))..)))))) ( -20.80, z-score = -2.21, R) >dp4.chrXR_group6 3518084 91 + 13314419 ----AAUUCCCCUGCGCUUA----ACUUAUCCAGGAUCUUA-UUUCUUUGAAAAGUGACUUGGGCGCCCACAUUGAUGGUUUCAUCGCCGUGGCCGCUCA ----................----((((.((.((((.....-..)))).)).))))....((((((.((((..(((((....)))))..)))).)))))) ( -24.50, z-score = -1.38, R) >droPer1.super_61 278269 91 + 350175 ----AAUUCCCCUGCGCUUA----ACUUAUCCAGGAUCUUA-UUUCUUUGAAAAGUGACUUGGGCGCCCACAUUGAUGGUUUCAUCGCCGUGGCCGCUCA ----................----((((.((.((((.....-..)))).)).))))....((((((.((((..(((((....)))))..)))).)))))) ( -24.50, z-score = -1.38, R) >droGri2.scaffold_15110 11173339 97 - 24565398 CAACUGGCAGCACUCAUCGA---AAAUAAAUUGCUUUUCUUUACUUGCCACAUAGUGAUAUGGGCGCCCAUAUUGAUGGCUUCAUUGCAGUGGCAGCGCA ......((.((.......((---(((........)))))......((((((.....(((((((....)))))))....((......)).)))))))))). ( -26.20, z-score = -0.37, R) >droVir3.scaffold_13049 11714804 95 - 25233164 CCAUAUUCCUCAUAUAUUUA----UUUACCUUGUUUCCUAAU-UGCCACACAUAGCGAUCUGGGUGGCCACAUUGAUGGCUUCAUUGCUGUGGCUGCGCA ....................----............((..((-(((........)))))..))(..((((((..((((....))))..))))))..)... ( -24.00, z-score = -0.96, R) >droMoj3.scaffold_6680 15655628 97 + 24764193 UGUUAGCCCGCAUUUAAUUA---GUUUACCUUAUGUAUUUAUGGGUUAUUUACAGCGACUUGGGUGCCCACAUUGAUGGCUUCAUUGCUGUUGCGGCACA .....(((.(((........---....((((.(((....))))))).....(((((((..((((.(((.........))))))))))))))))))))... ( -22.60, z-score = 0.34, R) >triCas2.chrUn_29 123243 80 - 145421 ---------------GCCU-----UUUAAUGUGCUAUCUUGCCCCUUUUUUUUAGUGAUUUGGGCGCGCAUAUCGACGGUUUCAUCGCCGUGGUGGCCCA ---------------(((.-----....((((((......((((..((........))...))))))))))..(.(((((......))))).).)))... ( -21.70, z-score = -0.71, R) >consensus UCUUAUUCCACAUAUACCGA____ACUAAUUUCGUAACUUA_UUCUUUUCUACAGUGACUUGGGCGCCCACAUUGAUGGUUUCAUUGCCGUGGCCGCUCA ............................................................((((...((((..(((((....)))))..))))...)))) ( -8.30 = -8.00 + -0.30)
| Location | 5,757,653 – 5,757,748 |
|---|---|
| Length | 95 |
| Sequences | 11 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 64.18 |
| Shannon entropy | 0.77473 |
| G+C content | 0.45832 |
| Mean single sequence MFE | -20.88 |
| Consensus MFE | -9.17 |
| Energy contribution | -8.56 |
| Covariance contribution | -0.61 |
| Combinations/Pair | 1.54 |
| Mean z-score | -0.51 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.604871 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 5757653 95 - 24543557 CCUCCUAUUCCACAUAUACCGCC---ACUAAAUACGUAAC-AUU-UCUUUUCUACAGCGAUCUGGGUGCCCACAUUGAUGGUUUCAUUGCCGUGGCCGCU ....................(((---((............-...-............((((.(((....))).))))..(((......)))))))).... ( -18.00, z-score = -0.31, R) >droSim1.chr3L 5269414 95 - 22553184 UCUCUUAUUCCACAUAUACCGCC---ACAAAAUUCGUAAC-CAU-UCUUCUCUACAGUGAUCUGGGAGCCCACAUUGAUGGUUUCAUUGCCGUGGCCGCU ....................(((---((............-...-.........(((((...(((....))))))))..(((......)))))))).... ( -19.20, z-score = -0.78, R) >droSec1.super_2 5694488 95 - 7591821 CCUCUUAUUCCACAUAUACCGCC---ACAAAAUUCGUAAC-CAU-UCUUCUCUACAGUGAUCUGGGAGCCCACAUUGAUGGUUUCAUUGCCGUGGCCGCU ....................(((---((............-...-.........(((((...(((....))))))))..(((......)))))))).... ( -19.20, z-score = -0.72, R) >droEre2.scaffold_4784 8448222 95 - 25762168 ACUCUUAUUCCACAUAUACCGCC---ACUAAUUUGGUAAC-CUU-UCUUUUCUGCAGCGACCUGGGAGCCCACAUCGAUGGCUUUAUUGCCGUGGCCGCU ....................(((---((............-...-............(((..(((....)))..)))..(((......)))))))).... ( -20.60, z-score = -0.47, R) >droYak2.chr3L 6327088 99 - 24197627 CCUCUUAUUCCACAUAUAUCGCCUAUACUAAGAUCGCAACACUU-UCUUUUCUAUAGUGACUUGGGAGCCCACAUUGAUGGUUUCAUUGCCGUGGCCGCU ........(((.((....((((.((((..((((...........-))))...))))))))..)))))((((((..(((((....)))))..))))..)). ( -16.60, z-score = 0.48, R) >droAna3.scaffold_13337 10510362 86 + 23293914 -------AUUAUUAUCUUUCUA----UUUGUUUU---CAUAAAUGUCUCUUUCUUAGUGACUUGGGCGCUCAUAUCGAUGGCUUCAUUGCAGUGGCCGCC -------..............(----(((((...---.))))))(((.((.....)).)))...((((..(((..(((((....)))))..)))..)))) ( -15.70, z-score = -0.48, R) >dp4.chrXR_group6 3518086 91 + 13314419 ----GCAAUUCCCCUGCGCUUA----ACUUAUCCAGGAUCUUAU-UUCUUUGAAAAGUGACUUGGGCGCCCACAUUGAUGGUUUCAUCGCCGUGGCCGCU ----((.........(((((((----((((.((.((((......-.)))).)).))))....)))))))((((..(((((....)))))..))))..)). ( -24.90, z-score = -1.21, R) >droPer1.super_61 278271 91 + 350175 ----GUAAUUCCCCUGCGCUUA----ACUUAUCCAGGAUCUUAU-UUCUUUGAAAAGUGACUUGGGCGCCCACAUUGAUGGUUUCAUCGCCGUGGCCGCU ----...........(((((((----((((.((.((((......-.)))).)).))))....)))))))((((..(((((....)))))..))))..... ( -22.90, z-score = -0.82, R) >droGri2.scaffold_15110 11173341 97 - 24565398 UGCAACUGGCAGCACUCAUCGA---AAAUAAAUUGCUUUUCUUUACUUGCCACAUAGUGAUAUGGGCGCCCAUAUUGAUGGCUUCAUUGCAGUGGCAGCG (((.....)))((.......((---(((........)))))......((((((.....(((((((....)))))))....((......)).)))))))). ( -26.00, z-score = -0.38, R) >droVir3.scaffold_13049 11714806 95 - 25233164 UGCCAUAUUCCUCAUAUAUUUA----UUUACCUUGUUUCCUAAU-UGCCACACAUAGCGAUCUGGGUGGCCACAUUGAUGGCUUCAUUGCUGUGGCUGCG ......................----............((..((-(((........)))))..))(..((((((..((((....))))..))))))..). ( -24.00, z-score = -1.05, R) >droMoj3.scaffold_6680 15655630 97 + 24764193 CUUGUUAGCCCGCAUUUAAUUA---GUUUACCUUAUGUAUUUAUGGGUUAUUUACAGCGACUUGGGUGCCCACAUUGAUGGCUUCAUUGCUGUUGCGGCA .......(((.(((........---....((((.(((....))))))).....(((((((..((((.(((.........)))))))))))))))))))). ( -22.60, z-score = 0.16, R) >consensus CCUCUUAUUCCACAUAUACCGA____ACUAAAUUCGUAAC_CAU_UCUUUUCUACAGUGACCUGGGAGCCCACAUUGAUGGUUUCAUUGCCGUGGCCGCU ........................................................(((.(((((....))).....(((((......))))))).))). ( -9.17 = -8.56 + -0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:05:53 2011