| Sequence ID | dm3.chr3L |
|---|---|
| Location | 5,733,492 – 5,733,611 |
| Length | 119 |
| Max. P | 0.908736 |
| Location | 5,733,492 – 5,733,611 |
|---|---|
| Length | 119 |
| Sequences | 8 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 87.48 |
| Shannon entropy | 0.26032 |
| G+C content | 0.61612 |
| Mean single sequence MFE | -46.92 |
| Consensus MFE | -33.16 |
| Energy contribution | -33.91 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.32 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.20 |
| SVM RNA-class probability | 0.908736 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 5733492 119 + 24543557 UCGCCGCGUCAAUCGCCGCGACAGUCGCCCAAGCAGGAUAUCGAGGUGAUUGAGAUCUUCGAGAGCGAGGCGGAACGACUGGCCGCCUCCCAGCAGGUGGCCGUCGUCCACCAGCAUCC ..(((((.(((((((((.(((...((((....)).))...))).)))))))))..((.....))))).((.(((.((((.((((((((......))))))))))))))).)).)).... ( -52.80, z-score = -2.70, R) >droGri2.scaffold_15110 11149078 118 + 24565398 UCCCCGCGACAGUCGCCACGUCAGUCACCCAAACAGGAAAUCGAGGUAAUUGAGAUCUUUGAGAGCGAAUCAGAACGCUUGGCGGCCUCGCAGCAGGUUGCUGUAGUCCAUCAGCAUU- .....((((..((((((...(((((.((((............).))).))))).........(((((........))))))))))).)))).......(((((........)))))..- ( -33.60, z-score = -0.27, R) >droWil1.scaffold_180698 4000711 119 + 11422946 UCGCCAAGGCAAUCGCCGCGUCAAUCGCCCAAACAAGAGAUCGAAGUAAUCGAAAUCUUUGAAAGUGAAUCCGAGCGUUUGGCCUCGUCCCAACAGGUUGCAGUAGUCCACCAACAUUC ..((((((((....)))((.....((((......((((..((((.....))))..)))).....))))......))..)))))............(((.((....))..)))....... ( -24.30, z-score = 0.19, R) >droAna3.scaffold_13337 10484705 119 - 23293914 UCGCCGCGACAAUCGCCGCGUCAGUCGCCCAAACAGGAGAUCGAGGUUAUCGAGAUUUUUGAGAGCGAGGCGGAGCGACUGGCCGCCUCCCAGCAGGUGGCCGUCGUCCACCAGCAUCC .(((.(((.....))).)))....(((((((((...((..((((.....))))..)))))).).))))((.(((.((((.((((((((......))))))))))))))).))....... ( -48.80, z-score = -2.05, R) >droEre2.scaffold_4784 8424528 119 + 25762168 UCGCCGCGUCAAUCGCCGCGACAGUCCCCCAAGCAGGACAUCGAGGUGAUUGAGAUCUUCGAGAGCGAGGCGGAACGGCUGGCCGCCUCCCAGCAGGUGGCCGUCGUCCACCAGCAUCC ..(((((.(((((((((.(((..((((........)))).))).)))))))))..((.....))))).((.(((.((((.((((((((......))))))))))))))).)).)).... ( -56.00, z-score = -3.41, R) >droYak2.chr3L 6302711 119 + 24197627 UCGCCGCGUCAAUCGCCGCGACAGUCGCCCAAGCAAGAUAUCGAGGUGAUUGAGAUCUUCGAGAGCGAGGCGGAACGACUGGCCGCCUCCCAGCAGGUGGCCGUCGUCCACCAGCAUCC ..(((((.(((((((((.(((..(((((....))..))).))).)))))))))..((.....))))).((.(((.((((.((((((((......))))))))))))))).)).)).... ( -52.40, z-score = -3.12, R) >droSec1.super_2 5670597 119 + 7591821 UCGCCGCGUCAAUCGCCGCGACAGUCCCCCAAGCAGGAUAUCGAGGUGAUUGAGAUCUUCGAGAGCGAGGCGGAACGACUGGCCGCUUCCCAGCAGGUGGCCGUCGUCCACCAGCACCC ..(((((.(((((((((.(((..((((........)))).))).)))))))))..((.....))))).((.(((.((((.((((((((......))))))))))))))).)).)).... ( -52.40, z-score = -3.06, R) >droSim1.chr3L 5245460 119 + 22553184 UCGCCGCGUCAAUCGCCGCGACAGUCCCCCAAGCAGGAUAUCGAGGUGAUUGAGAUCUUCGAGAGCGAGGCGGAACGACUGGCCGCCUCCCAGCAGGUGGCCGUCGUCCACCAGCAUCC ..(((((.(((((((((.(((..((((........)))).))).)))))))))..((.....))))).((.(((.((((.((((((((......))))))))))))))).)).)).... ( -55.10, z-score = -3.78, R) >consensus UCGCCGCGUCAAUCGCCGCGACAGUCGCCCAAGCAGGAUAUCGAGGUGAUUGAGAUCUUCGAGAGCGAGGCGGAACGACUGGCCGCCUCCCAGCAGGUGGCCGUCGUCCACCAGCAUCC .(((.(((.....))).)))....................((((((..........))))))..((..((.((.(((((.((((((((......))))))))))))))).)).)).... (-33.16 = -33.91 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:05:46 2011