| Sequence ID | dm3.chr3L |
|---|---|
| Location | 5,730,566 – 5,730,658 |
| Length | 92 |
| Max. P | 0.998033 |
| Location | 5,730,566 – 5,730,658 |
|---|---|
| Length | 92 |
| Sequences | 9 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 78.08 |
| Shannon entropy | 0.43346 |
| G+C content | 0.42664 |
| Mean single sequence MFE | -19.31 |
| Consensus MFE | -13.56 |
| Energy contribution | -13.47 |
| Covariance contribution | -0.10 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.82 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.24 |
| SVM RNA-class probability | 0.998033 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 5730566 92 - 24543557 -CCCUCCAAUCCGC-AACAGGAUU-CUCCUGCUC---UUGCACGUAACGAAGGCACUUAAGUGCACUUCUUGCUAUAAUUAAUUAUCCUUUCAACUUU -...........((-((((((...-..))))...---))))..((((.((((((((....)))).))))))))......................... ( -21.60, z-score = -4.16, R) >droMoj3.scaffold_6680 15627224 92 + 24764193 ---CUGGCUGCCAGCUGCUUGCUGCU-UUUGCCU--GCUGCUUGUAACGAAGGCACUUAAGUGCACUUCUUGCUAUAAUUAAUUAUCCUUUCAACUUU ---.(((((((.(((.((..((....-...))..--)).))).)))..((((((((....)))).))))..))))....................... ( -23.80, z-score = -1.55, R) >droGri2.scaffold_15110 11146002 76 - 24565398 --------------------GCUGCUGGCUGUCU--GCUGCUUGUAACGAAGGCACUUAAGUGCACUUCUUGCUAUAAUUAAUUAUCCUUUCAACUUU --------------------...((.(((.....--)))))..((((.((((((((....)))).))))))))......................... ( -16.70, z-score = -1.28, R) >droPer1.super_27 567108 76 - 1201981 ---------------------CUC-CUGCUGCUCCAGCUGCACGUAACGAAGGCACUUAAGUGCACUUCUUGCUAUAAUUAAUUAUCCUUUCAACUUU ---------------------...-.(((.((....)).))).((((.((((((((....)))).))))))))......................... ( -17.60, z-score = -2.87, R) >dp4.chrXR_group6 5420137 76 + 13314419 ---------------------CUC-CUGCUGCUCCAGCUGCACGUAACGAAGGCACUUAAGUGCACUUCUUGCUAUAAUUAAUUAUCCUUUCAACUUU ---------------------...-.(((.((....)).))).((((.((((((((....)))).))))))))......................... ( -17.60, z-score = -2.87, R) >droEre2.scaffold_4784 8421469 94 - 25762168 -CCCUCCAAUCCACUCCUGCUCCUGUUCUUGCUC---CUGCACGUAACGAAGGCACUUAAGUGCACUUCUUGCUAUAAUUAAUUAUCCUUUCAACUUU -.................((....((((.(((..---..))).).)))((((((((....)))).))))..))......................... ( -15.60, z-score = -2.94, R) >droYak2.chr3L 6299559 93 - 24197627 CCCCUCCAAGCCGC-AACUGGAUU-CUCCUGCUC---UUGCACGUAACGAAGGCACUUAAGUGCACUUCUUGCUAUAAUUAAUUAUCCUUUCAACUUU ......((((..((-(...((...-..))))).)---)))...((((.((((((((....)))).))))))))......................... ( -18.10, z-score = -2.07, R) >droSec1.super_2 5667708 93 - 7591821 -CCCUCCAAUCCGCAAACGGGAUU-CUCCUGCUC---UUGCACGUAACGAAGGCACUUAAGUGCACUUCUUGCUAUAAUUAAUUAUCCUUUCAACUUU -...........((((.((((...-..))))...---))))..((((.((((((((....)))).))))))))......................... ( -21.20, z-score = -3.49, R) >droSim1.chr3L 5242548 92 - 22553184 -CCCUCCAAUCCGC-AACAGGAUU-CUCCUGCUC---UUGCACGUAACGAAGGCACUUAAGUGCACUUCUUGCUAUAAUUAAUUAUCCUUUCAACUUU -...........((-((((((...-..))))...---))))..((((.((((((((....)))).))))))))......................... ( -21.60, z-score = -4.16, R) >consensus _CCCUCCAAUCCGC_AAC_GGCUU_CUCCUGCUC___CUGCACGUAACGAAGGCACUUAAGUGCACUUCUUGCUAUAAUUAAUUAUCCUUUCAACUUU ..............................((.......))..((((.((((((((....)))).))))))))......................... (-13.56 = -13.47 + -0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:05:45 2011