| Sequence ID | dm3.chr3L |
|---|---|
| Location | 5,715,667 – 5,715,721 |
| Length | 54 |
| Max. P | 0.809145 |
| Location | 5,715,667 – 5,715,721 |
|---|---|
| Length | 54 |
| Sequences | 4 |
| Columns | 54 |
| Reading direction | forward |
| Mean pairwise identity | 99.07 |
| Shannon entropy | 0.01502 |
| G+C content | 0.44907 |
| Mean single sequence MFE | -13.33 |
| Consensus MFE | -13.51 |
| Energy contribution | -13.32 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.17 |
| Structure conservation index | 1.01 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.809145 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 5715667 54 + 24543557 GGUGAGUACAAAAGAAAAGGACGAGUUCUUUGCCUUUGAGUUCAUCAUCCAGGC ((((((..((((.(.((((((....)))))).).))))..))))))........ ( -13.30, z-score = -1.23, R) >droSim1.chr3L 5227678 54 + 22553184 GGUGAGUACAAAAGAAAAGGACGAGUUCUUUGCCUUUGAGUUCAUCAUCCAGGC ((((((..((((.(.((((((....)))))).).))))..))))))........ ( -13.30, z-score = -1.23, R) >droSec1.super_2 5651577 54 + 7591821 GGUGAGUACAAAAGAAAAGGACGAGUUCUUUGCCUUUGAGUUCAUCAUCCAGGC ((((((..((((.(.((((((....)))))).).))))..))))))........ ( -13.30, z-score = -1.23, R) >droEre2.scaffold_4784 8406429 54 + 25762168 GGUGAGUACAAAAGAAGAGGACGAGUUCUUUGCCUUUGAGUUCAUCAUCCAGGC ((((((..((((.(.((((((....)))))).).))))..))))))........ ( -13.40, z-score = -0.98, R) >consensus GGUGAGUACAAAAGAAAAGGACGAGUUCUUUGCCUUUGAGUUCAUCAUCCAGGC ((((((..((((.(.((((((....)))))).).))))..))))))........ (-13.51 = -13.32 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:05:43 2011