| Sequence ID | dm3.chr3L |
|---|---|
| Location | 5,713,697 – 5,713,790 |
| Length | 93 |
| Max. P | 0.644939 |
| Location | 5,713,697 – 5,713,790 |
|---|---|
| Length | 93 |
| Sequences | 7 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 72.09 |
| Shannon entropy | 0.46969 |
| G+C content | 0.40327 |
| Mean single sequence MFE | -12.52 |
| Consensus MFE | -7.91 |
| Energy contribution | -7.91 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.07 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.644939 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 5713697 93 - 24543557 -------------------AUAGCCACCAUACACUCAAUCCAUCCAUAGUCGUGCGCAUUCUUGAAUAUGGCCACACGGAAGUGAAAAUUGAAAAAUAGCAAACACACACAU -------------------...............(((((.........((((((..((....))..))))))..(((....)))...))))).................... ( -13.60, z-score = -0.13, R) >droEre2.scaffold_4784 8404403 92 - 25762168 -------------------AUAGCGCCCAUACCCUCAAUCCAUCCAUAGCCG-GCGCAUUCUUGAAUAUGGCCACACGGAAGUGAAAAUUGAAAAAUAGCAAACACACACAU -------------------.....((........(((((............(-((.(((........)))))).(((....)))...)))))......))............ ( -14.74, z-score = -0.17, R) >droYak2.chr3L 6280674 112 - 24197627 AUAACCCCCCCCCCCCCCCCUUCCUCUCAUACCCUGAAUCCAUCCAUAGCCGUGCGCAUUCUUGAAUAUGGCCACACGGAAGUGAAAAUUGAAAAAUAGCAAACACACACAU ...................(((((..(((.....)))...........((((((..((....))..)))))).....))))).............................. ( -14.70, z-score = -1.10, R) >droSec1.super_2 5649542 93 - 7591821 -------------------AUAGCCCCCAUACACUCAAUCCAUCCAUAGUCGUGCGCAUUCUUGAAUAUGGCCACACGGAAGUGAAAAUUGAAAAAUAGCAAACACACACAU -------------------...............(((((.........((((((..((....))..))))))..(((....)))...))))).................... ( -13.60, z-score = -0.18, R) >droSim1.chr3L 5225657 93 - 22553184 -------------------AUAGCCCCCAUACACUCAAUCCAUCCAUAGUCGUGCGCAUUCUUGAAUAUGGCCACACGGAAGUGAAAAUUGAAAAAUAGCAAACACACACAU -------------------...............(((((.........((((((..((....))..))))))..(((....)))...))))).................... ( -13.60, z-score = -0.18, R) >dp4.chrXR_group6 5401177 72 + 13314419 ----------------------------------------CAAACACACACAGAUGCAGAUACAAAUAUAUUCACACGGAAGUGAAAAUUGAAAAAUAGCAAACACACAUUU ----------------------------------------..............(((.................(((....)))...(((....))).)))........... ( -8.70, z-score = -2.85, R) >droPer1.super_27 547817 72 - 1201981 ----------------------------------------CAAACACACACAGAUGCAGAUACAAAUAUAUUCACACGGAAGUGAAAAUUGAAAAAUAGCAAACACACAUUU ----------------------------------------..............(((.................(((....)))...(((....))).)))........... ( -8.70, z-score = -2.85, R) >consensus ___________________AUAGCCCCCAUACACUCAAUCCAUCCAUAGUCGUGCGCAUUCUUGAAUAUGGCCACACGGAAGUGAAAAUUGAAAAAUAGCAAACACACACAU .......................................................((.................(((....)))...(((....))).))............ ( -7.91 = -7.91 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:05:41 2011