| Sequence ID | dm3.chr3L |
|---|---|
| Location | 5,679,710 – 5,679,823 |
| Length | 113 |
| Max. P | 0.573892 |
| Location | 5,679,710 – 5,679,823 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 75.64 |
| Shannon entropy | 0.46248 |
| G+C content | 0.56325 |
| Mean single sequence MFE | -20.67 |
| Consensus MFE | -13.44 |
| Energy contribution | -13.97 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.07 |
| Mean z-score | -0.96 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.573892 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 5679710 113 - 24543557 UUGGCAGGCAAAUAACAAUUGCUCCACUGACAGGCCUUCUGGCCAGGAUUCGUCCUUCCUUCCUUACCGUCCACCACCACCUCCCCACUUCGCAGC--UACCCGCCACUUUUCUG .((((.(((((.......))))).....(((.((((....))))((((........))))........))).........................--.....))))........ ( -23.50, z-score = -1.36, R) >droSim1.chr3L 5192571 115 - 22553184 UCUGCAGGCAAAUAACAAUUGCUCCACUGACAGGCCUUCUGGCCAGGAUUCGUCCUUCCUUCCUUAGCGUCCAUCUCCACCCCGCCACUUCGCAGCGCACAUCCCCCCUUUUCUG .((((.(((((.......))))).....(((.((((....))))((((........))))........)))....................)))).................... ( -22.60, z-score = -0.81, R) >droSec1.super_2 5615721 115 - 7591821 UCUGCAGGCAAAUAACAAUUGCUCCACUGACAGGCCUUCUGGCCAGGAUUCGUCCUUCCUUCCUUACCGUCCAUCUCCACCCCGCCACUUCGCAGCGCACACGCCCCCUUUUCUG .((((.(((((.......))))).....(((.((((....))))((((........))))........)))....................)))).((....))........... ( -23.00, z-score = -1.06, R) >droYak2.chr3L 6245134 96 - 24197627 UCUGCAGGCAAAUAACAAUUGCUCCACUGACAGGCCUUCUGGCCAGGAUUCGUCCUUCCUUC--------------CCAUCCCCCCACUUCGCUGC-----UCCCCCCCUUCCUG ...((((((((.......))))......((..((((....))))((((........))))..--------------.............)).))))-----.............. ( -18.90, z-score = -1.15, R) >droEre2.scaffold_4784 8370452 98 - 25762168 UCUGCAGGC-UAUAACAAUUGCUCCACUGACAGGCCUUCUGGCCAGGAUUCGUCCUUCCUUCU-------------UCCCUGCCCCACUUCGCAGC---CCCUCCCCCUUUUCUG ...(((((.-......................((((....))))((((........))))...-------------..))))).............---................ ( -19.30, z-score = -0.70, R) >droAna3.scaffold_13337 10429827 89 + 23293914 UCUAAAGGCAAAUAACAAUUGCUCCACUGACAGGCCUUCUGGCCAGGAUUCCUCCUUCUUCCGCCA----CCACAUCCCCCCUCCCAUUUUGG---------------------- ......(((.......................((((....))))((((....))))......))).----.......................---------------------- ( -16.70, z-score = -0.66, R) >consensus UCUGCAGGCAAAUAACAAUUGCUCCACUGACAGGCCUUCUGGCCAGGAUUCGUCCUUCCUUCCUUA____CCA_CUCCACCCCCCCACUUCGCAGC___C_CCCCCCCUUUUCUG ...((.(((((.......))))).........((((....))))((((........))))...............................))...................... (-13.44 = -13.97 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:05:37 2011