| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,399,608 – 4,399,706 |
| Length | 98 |
| Max. P | 0.751243 |
| Location | 4,399,608 – 4,399,706 |
|---|---|
| Length | 98 |
| Sequences | 11 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 59.14 |
| Shannon entropy | 0.90750 |
| G+C content | 0.43211 |
| Mean single sequence MFE | -21.46 |
| Consensus MFE | -10.02 |
| Energy contribution | -10.46 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.38 |
| Mean z-score | -0.23 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.751243 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4399608 98 + 23011544 -----UAGCUG-ACCAAUGUUCUAUGAUAAUAUUAAAUGUUUGCUUUGUUUAUUUC-AGGGUUAACGCGCGCUAUCAGCGUCGGGCGCGUCUUGACUUCGGUACC -----..((((-(........((..(((((...((((.(....))))).)))))..-))((((((.(((((((..........))))))).)))))))))))... ( -21.80, z-score = 0.37, R) >droSim1.chr2L 4322659 98 + 22036055 -----UAGCUG-ACCAUUGUUGUAUGCCUUUAUUAAUUGUUUGCCUUGUUUAUUUU-AGGGUUAACGCGCGCUAUCAGCGUCGGGCGCGUCUUGACUUCGGUACC -----..((((-(...(((..(..((((..........(((.((((((.......)-))))).))).(((((.....))).))))))..)..)))..)))))... ( -22.60, z-score = 0.55, R) >droSec1.super_5 2497869 98 + 5866729 -----UAGCUG-ACCAUUGUUGUAUGCCUUUAUUAAUUGUUUGCCUUGUUCAUUUU-AGGGUUAACGCGCGCUAUCAGCGUCGGGCGCGUCUUGACUUCGGUACC -----..((((-(...(((..(..((((..........(((.((((((.......)-))))).))).(((((.....))).))))))..)..)))..)))))... ( -22.60, z-score = 0.57, R) >droYak2.chr2L 4432963 98 + 22324452 -----CAGCUG-ACCAUAGUGGUAAUCCUCUACUAAUUGUAUUCCACGUUUAUUUU-AGGGUUAACGCGCGCUACCAGCGUCGAGCGCGUCUUGACUUUGGUACC -----......-(((.((((((.......)))))).....................-((((((((.(((((((..........))))))).)))))))))))... ( -25.70, z-score = -0.82, R) >droEre2.scaffold_4929 4481949 98 + 26641161 -----CAUUGG-ACCUUUUUUGAGUUCCUCUAUUAAGUGUAUUCCUUGUUUAUUUU-AGGGUUAACGCGCGCUAUCAGCGUCGUGCGCGUCUUGACUUUGGUACC -----....((-(.(((....))).)))..........................((-(((((((((((((((..........))))))))..))))))))).... ( -22.70, z-score = -0.87, R) >droAna3.scaffold_12943 1585624 97 - 5039921 -----UAUUCACAAUUUCGCAUUAUUAUUUCUUACAUUC--UAUUCUAUCUAUUUU-AGGGUCAAUGCGCGCUAUCAGCGGCGGGCACGCCUUGAUUUUGGCACC -----............((((((..((.....)).....--.((((((.......)-))))).)))))).((((((((.((((....)))))))))...)))... ( -18.80, z-score = -1.04, R) >droWil1.scaffold_180772 4785889 100 - 8906247 ---ACAACUCA-AACAAAGCUUAUAUAUAUUUUAAUAUCAUUCUUUUACCAAUUAC-AGAGUGAAUGCGCGGUAUCAGCGACGAGCGCGUCUUGAUUUCGGCACC ---........-.........................(((((((.(........).-))))))).(((.(((.(((((.((((....))))))))).)))))).. ( -19.80, z-score = -1.12, R) >droVir3.scaffold_12963 2414593 97 - 20206255 CCAAAUAUUUG-GUUGAGUUAUAUAUUUAAUC----AAUAUUUUUUG--CUUUUGC-AGAGUAAAUGCGCGCUAUCAGCGUCGGGCGCGACUUGAUUUUGGCACC ..(((((((.(-(((((((.....))))))))----)))))))((((--(....))-))).....(((.((..(((((.((((....)))))))))..))))).. ( -24.40, z-score = -1.12, R) >droMoj3.scaffold_6500 9532096 101 - 32352404 CUAAAUAUACA-UAGGAGGCAUAAUUAAAAUGCUAAACAAUCCGUUU--CCUUUGC-AGAGUUAAUGCGCGCUAUCAGCGUCGAGCGCGUCUUGAUUUUGGCACC .........((-.(((((((((.......))))).(((.....))))--))).))(-((((((((.(((((((..........))))))).)))))))))..... ( -27.20, z-score = -1.64, R) >anoGam1.chrX 10146584 104 + 22145176 CGAGUUGCGAAUGGGAAAUAAUUGUUCUCUCUGUGUUUGUUUUUUUUUUGUGUUUU-AGGGUCAACAAUCGCUACAUACGGCGUGCAAGACUAGACUUUGGCACC .(((..(((((((((((.......))))).....))))))..)))....(((((..-((((((......((((......)))).....))))...))..))))). ( -17.80, z-score = 1.72, R) >triCas2.ChLG8 10311932 76 + 15773733 -----------------------------CAGCUGAGUGUUUUUUUAAUGUGUUUUUAGGGUAAAUAAACGAUUCAGGAAGCGGGCGCGACUGGACUUUGGGACA -----------------------------(((((((((((((.((((.(.((....)).).)))).)))).))))))...((....))..)))............ ( -12.70, z-score = 0.85, R) >consensus _____UAGCUG_ACCAAUGUUUUAUUCUUUUAUUAAUUGUUUUCUUUGUUUAUUUU_AGGGUUAACGCGCGCUAUCAGCGUCGGGCGCGUCUUGACUUUGGCACC ..........................................................(((((((..((((((..........))))))..)))))))....... (-10.02 = -10.46 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:16:20 2011