| Sequence ID | dm3.chr3L |
|---|---|
| Location | 5,677,181 – 5,677,290 |
| Length | 109 |
| Max. P | 0.796173 |
| Location | 5,677,181 – 5,677,290 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 90.47 |
| Shannon entropy | 0.15820 |
| G+C content | 0.48864 |
| Mean single sequence MFE | -20.49 |
| Consensus MFE | -19.54 |
| Energy contribution | -19.74 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.796173 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 5677181 109 + 24543557 UUUGUGUGUAACAUGUAAAUGUCGUUUCGGCAUUCGCGCAUUUUAAGCUGCCAUCCCACAACUGCUCAGCACCUUACAA-UUCACACACACACACGCACACCCACCCACC ..(((((((.....(..(((((((...)))))))..)(.(((.((((.(((.................))).)))).))-).)))))))).................... ( -20.83, z-score = -1.53, R) >droSim1.chr3L 5190078 101 + 22553184 UUUGUGUGUAACAUGUAAAUGUCGUUUCGGCAUUCGCGCAUUUUAAGCUGCCAUCCCACAACUGCUCAGCACCUCACAA-UUCACACACACGCACACCCACC-------- ..(((((((.....(..(((((((...)))))))..).........((((.((.........))..)))).........-...)))))))............-------- ( -20.30, z-score = -1.34, R) >droSec1.super_2 5613270 101 + 7591821 GUUGUGUGUAACAUGUAAAUGUCGUUUCGGCAUUCGCGCAUUUAAAGCUGCCAUCCCACAACUGCUCAGCACCUCACAA-UUCACACACACGCACACCCACC-------- (((((((((.....(..(((((((...)))))))..).........((((.((.........))..)))).........-...))))))).)).........-------- ( -21.10, z-score = -1.19, R) >droYak2.chr3L 6242637 110 + 24197627 UUUGUGUGUAACAUGUAAAUGUCGUUUCGGCAUUCGCGCAUUUUAAGCUGCCAUUCCACAACUGCUCAGCACCUCACAAAUUCACACACACACACACCCGCACACCCACC ..(((((((.....(..(((((((...)))))))..).........((((.((.........))..)))).............))))))).................... ( -20.30, z-score = -1.30, R) >droEre2.scaffold_4784 8367983 99 + 25762168 UUUGUGUGUAACAUGUAAAUGUCGUUUCGGCAUUCGCGCAUUUUAAGCUGCCAUCCCACAACUGCUCAGCACCUCACGA-UUCACACAC--GCACACCCACC-------- ..(((((((.....(..(((((((...)))))))..).........((((.((.........))..)))).........-.....))))--)))........-------- ( -19.90, z-score = -0.86, R) >consensus UUUGUGUGUAACAUGUAAAUGUCGUUUCGGCAUUCGCGCAUUUUAAGCUGCCAUCCCACAACUGCUCAGCACCUCACAA_UUCACACACACGCACACCCACC________ ..(((((((.....(..(((((((...)))))))..).........((((.((.........))..)))).............))))))).................... (-19.54 = -19.74 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:05:36 2011