| Sequence ID | dm3.chr3L |
|---|---|
| Location | 5,614,253 – 5,614,355 |
| Length | 102 |
| Max. P | 0.506971 |
| Location | 5,614,253 – 5,614,355 |
|---|---|
| Length | 102 |
| Sequences | 7 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 78.49 |
| Shannon entropy | 0.41172 |
| G+C content | 0.42422 |
| Mean single sequence MFE | -20.72 |
| Consensus MFE | -11.99 |
| Energy contribution | -12.09 |
| Covariance contribution | 0.10 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.506971 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 5614253 102 + 24543557 AUUUUUACCGUAAUCCUUUCGUUUUGAGCCGCUUGAGAAGCAAACACACACAUGCGCACAUCCCCGAGCUACAAUAUUUUCAUUCGGUCGAAAACGAGAUUG ................(((((((((..((((..(((((((((..........)))((.(......).)).......))))))..))))..)))))))))... ( -22.60, z-score = -2.28, R) >droSec1.super_2 5550745 97 + 7591821 AUUUUUACCGUAAUCCUUUCGUUUUGAGCCGCUUGAGAAGCAAACACACACAUGCGCACAUCCCAGAGCUA-----UUUUCAUUCGGUCGAAAACGAGAUUG ................(((((((((..((((..(((((((((..........)))((.(......).))..-----))))))..))))..)))))))))... ( -22.60, z-score = -2.33, R) >droYak2.chr3L 6178805 97 + 24197627 AUUUUUACCGUAAUCCUUUCGUUUCGAGCCGCUUGCAAACCAAACACACACACACACACAUCCUAGAGCUA-----UUUUCAUUCGGUCGAAAACGAGAUUG ................(((((((((((.(((..((.(((................................-----))).))..)))))).))))))))... ( -12.75, z-score = -0.58, R) >droEre2.scaffold_4784 8302032 89 + 25762168 AUUUUUACCGUAAUCCUUUCGUUUUGAGCCGCUUGCGAAGCAAACACACACA--------UCCCAGAGCUA-----UUUUCAUUCGGUCGAAAACGAGAUUG ................(((((((((..((((..((.(((((...........--------.......))).-----.)).))..))))..)))))))))... ( -15.87, z-score = -0.72, R) >droAna3.scaffold_13337 10355469 93 - 23293914 AUUUUUACCGUAAUCCUUUCGUUUUGAUCCGCUUGAGAAACACGCACUCCACG--------CCGGGGA-GAAGAUAUUUUCAUUCGGCCGAAAACGAGAUUG ................(((((((((...(((..((((((.....(.((((...--------..)))).-)......))))))..)))...)))))))))... ( -21.00, z-score = -0.56, R) >dp4.chrXR_group6 5289687 102 - 13314419 AUUUUUACCGUAAUCCUUUCGUUUUGAUCCGCUUGAGAAACACUCACUGGAGGAGAAUCAGCCGAAGACGUACAUAUUUUCAUUCGGCUGAAAAUGAGAUUG ................((((((((...(((.((((((.....))))..)).)))...(((((((((((...........)).)))))))))))))))))... ( -25.10, z-score = -1.65, R) >droPer1.super_27 434622 102 + 1201981 AUUUUUACCGUAAUCCUUUCGUUUUGAUCCGCUUGAGAAACACUCACUGGAGGAGAAUCAGCCGAAGACGUACAUAUUUUCAUUCGGCUGAAAAUGAGAUUG ................((((((((...(((.((((((.....))))..)).)))...(((((((((((...........)).)))))))))))))))))... ( -25.10, z-score = -1.65, R) >consensus AUUUUUACCGUAAUCCUUUCGUUUUGAGCCGCUUGAGAAACAAACACACACAGACACACAUCCCAGAGCUA__AUAUUUUCAUUCGGUCGAAAACGAGAUUG ................(((((((((...(((..((((((.....................................))))))..)))...)))))))))... (-11.99 = -12.09 + 0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:05:35 2011