| Sequence ID | dm3.chr3L |
|---|---|
| Location | 5,597,789 – 5,597,874 |
| Length | 85 |
| Max. P | 0.973779 |
| Location | 5,597,789 – 5,597,874 |
|---|---|
| Length | 85 |
| Sequences | 3 |
| Columns | 86 |
| Reading direction | forward |
| Mean pairwise identity | 75.19 |
| Shannon entropy | 0.34652 |
| G+C content | 0.33169 |
| Mean single sequence MFE | -19.59 |
| Consensus MFE | -8.79 |
| Energy contribution | -10.35 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.14 |
| Mean z-score | -3.24 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.90 |
| SVM RNA-class probability | 0.973779 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 5597789 85 + 24543557 GCUCAGAAAUGAGCAACGAAUUGG-AAUGUCCGAUAAGCCUUUUUUAUCAAAAUAAUAAUUUUUACAUUCCCUUUUCAUAACGCUU (((((....)))))...(((..((-(((((..((((((.....))))))(((((....))))).)))))))...)))......... ( -20.90, z-score = -4.47, R) >droSim1.chr3L 5115441 86 + 22553184 GCUCAGAAAUGAGUAACGAAUUGGGAAUGUCUGAUAAGCCGUUUUUAUCAGAAAAAUAAUUUGUUCAUUGCCGUUCAGUUAUUCCU (((((....)))))(((((((.((.(((((((((((((.....))))))))).............)))).)))))).)))...... ( -21.41, z-score = -2.70, R) >droSec1.super_2 5534064 70 + 7591821 GCUCAGAAAUGAGUAACGAAUUGGGAAUGUCUGAUAA----------------AAAUAAUUUGUUCAUUGCCUUUCAGUUAUUCCU (((((....)))))........(((((((.((((...----------------.....................)))).))))))) ( -16.46, z-score = -2.54, R) >consensus GCUCAGAAAUGAGUAACGAAUUGGGAAUGUCUGAUAAGCC_UUUUUAUCA_AAAAAUAAUUUGUUCAUUGCCUUUCAGUUAUUCCU (((((....)))))...(((..((.((((....................................)))).)).))).......... ( -8.79 = -10.35 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:05:32 2011