| Sequence ID | dm3.chr3L |
|---|---|
| Location | 5,538,099 – 5,538,210 |
| Length | 111 |
| Max. P | 0.587954 |
| Location | 5,538,099 – 5,538,210 |
|---|---|
| Length | 111 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.26 |
| Shannon entropy | 0.36283 |
| G+C content | 0.43404 |
| Mean single sequence MFE | -33.12 |
| Consensus MFE | -19.00 |
| Energy contribution | -18.36 |
| Covariance contribution | -0.64 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.587954 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 5538099 111 + 24543557 ACGGUUCGUUGUCUUUUGGUCGUCAAUGUCGAGAAUUAGACGACGGUUCUGCUCAUCGAACUUAGCAGAGUAGACGCAUUGCAAGAAAA---UGCAUGCGACGGCCUGGAAAAA------ .(((..((((((((....(((((((((.......))).))))))..(((((((..........))))))).))))((((.(((......---)))))))))))..)))......------ ( -35.10, z-score = -1.44, R) >droSim1.chr3L 5053507 111 + 22553184 ACGGUUCGUUGUCUUUUGGUCGUCAAUGUCGAGAAUCAGACGACGGUUCUGCUCAUCGAACUUAGCAGAGUAGACGCAUUGCAAGAAAA---UGCAAGCGACGGCCUGGAAAAA------ .(((..((((((((....((((((..((........))))))))..(((((((..........))))))).))))((.(((((......---)))))))))))..)))......------ ( -33.80, z-score = -0.88, R) >droSec1.super_2 5474680 111 + 7591821 ACGGUUCGUUGUCUUUUGGUCGUCAAUGUCGAGAAUUAGACGACGGUUCUGCUCAUCGAACUUAGCAGAGUAGACGCAUUGCAAGAAAA---UGCAAGCGACGGCCUGGAAAAA------ .(((..((((((((....(((((((((.......))).))))))..(((((((..........))))))).))))((.(((((......---)))))))))))..)))......------ ( -34.90, z-score = -1.42, R) >droYak2.chr3L 6101398 114 + 24197627 ACGGUUCGUUGUCUUUUGAUCGUCAAUGUCGAGAAUCAGACGACGGUUCUGAUCAUCGAACUUGGCAGAGUACACGCAUUGCAAAAAGA---UGCAAGCGACGGCCUGGAAAAAACA--- .(((..(((((.(((......(((((..((((..(((((((....).))))))..))))..))))).........(((((.......))---)))))))))))..))).........--- ( -34.20, z-score = -1.18, R) >droEre2.scaffold_4784 8224601 112 + 25762168 ACGGUUCGUUGUCUUUUGAUCGUCAAUAUCGAGAAUCAGACGACGGUUCUGAUCAUCGAACUUAGCGGAGUACACGCAUUGCAAAAAAA---UGCAAGCGACGGCCUGGAAAAAA----- .(((..((((((................((((..(((((((....).))))))..)))).....(((.......))).(((((......---)))))))))))..))).......----- ( -30.90, z-score = -0.99, R) >droAna3.scaffold_13337 10279083 114 - 23293914 CUGAUUCGUUGUCUUUUGGUCGUUAAUAUCGAGGAUAAGACGACGGUUCUCUGAAUCGAACUUGGCAGAGUAGACGCAUUGCAUCAAGA---UGCAAGCGACGGCCUGGAAAACACA--- .((((((((((((((.(..(((.......)))..).))))))))((....))))))))..((.(((...((...(((.((((((....)---)))))))))).))).))........--- ( -32.80, z-score = -1.05, R) >dp4.chrXR_group6 5206194 116 - 13314419 UUGAUUCGUUGUCUUUUGAUCGUUUAUAUCGAGUAUAAGACGACGAUUCUCUGCAUCGAAUUUGGCAGAGUAAACGCAUUGCACCAAGAAGAUGCAAGCGACGACCUGGAAAAGCC---- .....((((((((((....(((.......)))....))))))))))..((((((..........))))))....(((.(((((.(.....).))))))))................---- ( -32.80, z-score = -1.94, R) >droPer1.super_27 347638 116 + 1201981 UUGAUUCGUUGUCUUUUGAUCGUUUAUAUCGAGUAUAAGACGACGAUUCUCUGCAUCGAAUUUGGCAGAGUAAACGCAUUGCACCAAGAAGAUGCAAGCGACGACCUGGAAAAGCC---- .....((((((((((....(((.......)))....))))))))))..((((((..........))))))....(((.(((((.(.....).))))))))................---- ( -32.80, z-score = -1.94, R) >droWil1.scaffold_180698 7363315 117 - 11422946 CUGAUUCGUUGUCUUUUGAUCAUUGAUAUCAAGAAUAAGACGACGAUUCUCUGCAUCAAAUUUGGCAGAGUAAACGCAUUGCAUUAAAA---UGCAAGCGACGGCCUAAAAGGUGAAACA .....((((((((((....((.(((....)))))..))))))))))..((((((..........))))))....(((.((((((....)---))))))))...(((.....)))...... ( -34.30, z-score = -3.10, R) >droVir3.scaffold_13049 11470250 111 + 25233164 UUGGUUCGUUGUCUUUUGAUCAUUGAUAUCGACAAUCAGACGUCGAUUCUCUGCAUCAAAUUUUGCAGAGUAAACGCAUUGCAACCAAA---UGCAAGCGACGACCUGCAAAUG------ ..............((((((((..((.((((((........))))))))..)).)))))).(((((((.((...(((.(((((......---))))))))...)))))))))..------ ( -32.80, z-score = -2.58, R) >droMoj3.scaffold_6680 15404271 111 - 24764193 UUGGUUCGUUGUCUUUUUAUCAUUGAUAUCGACGAUCAAUCGUCGAUUCUCUGAAUCGAAUUUGGCAGAGUAAACGCAUUGCAACAAUA---UGCAAGCGACGACCUGUGAAUA------ (((((((..((((...........))))(((((((....)))))))......)))))))..((.((((.((...(((.(((((......---))))))))...)))))).))..------ ( -32.00, z-score = -1.92, R) >droGri2.scaffold_15110 16683111 111 - 24565398 UUGGUUCGUUGUCUUUUGAUCAUUGAUAUCGAGAAUUAAACGUCGAUUCUCUGAAUCAAAUUUAGCAGAGUAAACGCAUUGCAAUAAAA---UGCAAGCGACGACCUGCAAAUA------ ((((((((.((((...........)))).)(((((((.......))))))).))))))).....((((.((...(((.(((((......---))))))))...)))))).....------ ( -31.00, z-score = -2.81, R) >consensus AUGGUUCGUUGUCUUUUGAUCGUUAAUAUCGAGAAUCAGACGACGAUUCUCUGCAUCGAACUUGGCAGAGUAAACGCAUUGCAACAAAA___UGCAAGCGACGGCCUGGAAAAA______ ..((.(((.(((((((((((.......))))))....))))).))).))................(((.((...(((.(((((.........))))))))...)))))............ (-19.00 = -18.36 + -0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:05:28 2011