| Sequence ID | dm3.chr3L |
|---|---|
| Location | 5,530,238 – 5,530,332 |
| Length | 94 |
| Max. P | 0.751892 |
| Location | 5,530,238 – 5,530,332 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 72.18 |
| Shannon entropy | 0.53512 |
| G+C content | 0.46030 |
| Mean single sequence MFE | -29.87 |
| Consensus MFE | -12.64 |
| Energy contribution | -14.50 |
| Covariance contribution | 1.86 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.751892 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 5530238 94 - 24543557 GCAAAUAUGUGUAAGGCUCCUU-----------UGCAU-GAGCAAUCCGACC--AGGUAAGGUCCUUGGAAAAGGACCUGAAAUCAAUAGACAAACAAAGAGAGGCCA---- ..............((((((((-----------((..(-(......((....--.))..((((((((....))))))))............))..))))).)).))).---- ( -26.70, z-score = -2.11, R) >droSim1.chr3L 5045816 105 - 22553184 GCAAAUACGUGUAAGGCUCUUUUCCACCCCCAAUGCAU-GAGCAAUCCGACC--AGGUUAGGUCCUUGGAAAAGGUCCUGAAAUCAAUAGACAAACAAAAAGAGGCAG---- ((.......(((.(((..((((((((.......(((..-..)))....((((--......))))..))))))))..)))....((....))...))).......))..---- ( -24.24, z-score = -0.79, R) >droSec1.super_2 5467217 105 - 7591821 GCAAAUACGUGUAAGGCUCUUUGCUGCCCCCAAUGCAU-GAGCAAUCCGACC--AGGUUAGGUGCUUGGAAAAGGACCUGAAAUCAAUAGACAAACAAAGGGAGGCAG---- (((((..(......)....)))))(((((((..(((..-..)))..((....--.))((((((.(((....))).))))))..................))).)))).---- ( -29.20, z-score = -0.82, R) >droYak2.chr3L 6093985 106 - 24197627 GCAAAUAUGUGUGAGGCUCUUUUGUGCCCCCAGUGCAUGGAGCAAUCCGAGC--AGGUGAGGUCCUUGGAAAAGGACUUGAAAUCAAUAGGCAAACAAAGAGAGCCAC---- ..............(((((((((.((((.....(((.((((....)))).))--)(((.((((((((....))))))))...)))....))))....)))))))))..---- ( -42.40, z-score = -4.48, R) >droEre2.scaffold_4784 8214217 105 - 25762168 GCAAAUAUGUGUACGGCUCUUUUCUGCCCCCAAUGCAU-GAGGAAUCCGAGC--AGGUCAGGUCCUUGGAAAAGGACCUGAAAUCAAUAGACAAACAAAAGGAGGCAG---- .......................(((((.((..(((.(-(.......)).))--)..((((((((((....))))))))))...................)).)))))---- ( -31.90, z-score = -1.87, R) >droAna3.scaffold_13337 10269386 111 + 23293914 -UAGAUGAAAGUAAGUAUCCUGUUUUGCUGUUUUGUGCUUUUUUGAAGGACCUACGUCUAGCUCCCCGGAAAAUGCCUUGAAAUUAGUAUAAGCACAAGCAAAGACUGGCAG -.................((..(((((((((((((((((..(((.((((.......(((........))).....)))).)))..)))))))).)).)))))))...))... ( -24.80, z-score = -0.42, R) >consensus GCAAAUAUGUGUAAGGCUCUUUUCUGCCCCCAAUGCAU_GAGCAAUCCGACC__AGGUUAGGUCCUUGGAAAAGGACCUGAAAUCAAUAGACAAACAAAGAGAGGCAG____ ..............(.(((((((................((....))..........((((((((((....))))))))))................))))))).)...... (-12.64 = -14.50 + 1.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:05:26 2011