| Sequence ID | dm3.chr3L |
|---|---|
| Location | 5,520,730 – 5,520,845 |
| Length | 115 |
| Max. P | 0.621107 |
| Location | 5,520,730 – 5,520,845 |
|---|---|
| Length | 115 |
| Sequences | 4 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 81.38 |
| Shannon entropy | 0.29399 |
| G+C content | 0.36976 |
| Mean single sequence MFE | -18.82 |
| Consensus MFE | -11.16 |
| Energy contribution | -11.22 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.621107 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 5520730 115 + 24543557 CAACCUGAGAUAAAUACAUUUAAUCUCACACUUUAGCCACAACAACAACAACAACAA-GAGAUGAAAACCCAUUUACGGGCAUUAUCAUUAUCUCUAGUAAUUAGUGGCCUAGCAA .....((((((.((.....)).)))))).......(((((.................-..(((((...(((......)))..)))))(((((.....)))))..)))))....... ( -20.80, z-score = -3.02, R) >droSim1.chr3L 5036321 116 + 22553184 CAACCUGAGAUAAAUACAUUUAAUCUCACACUUCAGCCACAACAACAACAACAACAGCAAGAGAAGAAACCUUUUACGGGCAUUAUCAUUAUCUCUAGUAAUUAGUGGCCUAGCAA .....((((((.((.....)).)))))).......(((((................((..((((((....))))).)..))......(((((.....)))))..)))))....... ( -18.80, z-score = -2.05, R) >droYak2.chr3L 6083656 104 + 24197627 CAACCUGAGAUAAAUACAUUUAAUCUCACACUUUAACCGCAACAACAACAA----------AUGAAAAUCCCAUUACGGGCAUUAUCAUUAUCUCUAGUAAUUAGUGGCCUAGC-- .....((((((.((.....)).))))))........((((..........(----------((((.((((((.....))).))).)))))..(....)......))))......-- ( -15.50, z-score = -1.67, R) >droEre2.scaffold_4784 8204891 101 + 25762168 CAACCUGGGAUAAAUUCAUUUAAUCUCACACCUUAACCGCCACAAAAACG-------------GAAGCCUCUAUUAGGGGCAUUAUCAUAAUCUCUAGUAAUUAGUGUCCUAGC-- ....((((((((........................(((.........))-------------)..(((((.....)))))........................)))))))).-- ( -20.20, z-score = -1.53, R) >consensus CAACCUGAGAUAAAUACAUUUAAUCUCACACUUUAACCACAACAACAACAA__________AUGAAAACCCUAUUACGGGCAUUAUCAUUAUCUCUAGUAAUUAGUGGCCUAGC__ .....((((((.((.....)).)))))).................................................((.(((((..(((((.....)))))))))).))...... (-11.16 = -11.22 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:05:25 2011