| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,388,308 – 4,388,403 |
| Length | 95 |
| Max. P | 0.512818 |
| Location | 4,388,308 – 4,388,403 |
|---|---|
| Length | 95 |
| Sequences | 11 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 67.70 |
| Shannon entropy | 0.68005 |
| G+C content | 0.49979 |
| Mean single sequence MFE | -25.43 |
| Consensus MFE | -12.22 |
| Energy contribution | -12.75 |
| Covariance contribution | 0.52 |
| Combinations/Pair | 1.27 |
| Mean z-score | -0.54 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.512818 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4388308 95 + 23011544 ACUUGAUCGCCUAGUUGGC-UUAGUGCUUGUCUAUUUUCGGCAGGGUACGGAGCUG---CUGGCUCUCGCGACCAUCGAAACUAACGUAAUCGACUCAC---- ...((.(((((((((.(((-((.(((((((((.......)))).))))).))))))---)))).....)))).))((((.((....))..)))).....---- ( -26.70, z-score = -0.55, R) >droSim1.chr2L 4311325 95 + 22036055 ACUUGAUCGCCUAGUUGGC-UUAGUGCUUGUCUAUUUUCGGCAGGGAACGGAGCUG---CUGGCUCUCGCGACCAUCGAAACCAACGUAACCGAAUCUC---- ....(((((....(((((.-(..(((((((((.......))))))...((((((..---...)))).))....)))..)..))))).....)).)))..---- ( -22.10, z-score = 1.07, R) >droSec1.super_5 2486564 95 + 5866729 ACUUGAUCGCCUAGUUGGC-UUAGUGCUUGUCUAUUUUCGGCAGGGUACGGAGCUG---CUGGCUCUCGCGACCAUCUAAACCAACGUAACCGAAUCUC---- ....(((((....(((((.-((((...(((((.......)))))(((.((((((..---...)))).))..)))..)))).))))).....)).)))..---- ( -25.10, z-score = -0.20, R) >droYak2.chr2L 4421623 92 + 22324452 ACUUGAGCGGCUAGUUGAA-UUAGUGCUUGUCUAUUUUCGGCAGGGUACGGAGCUG---CUGGCUCUCGCGACCAUCGAAACCAACGUAACCAAAU------- .(.((((.(((((((.(..-...(((((((((.......)))).)))))....).)---)))))))))).).........................------- ( -21.70, z-score = 0.93, R) >droEre2.scaffold_4929 4470530 92 + 26641161 ACUUGAGCUGCUAGUUGGC-UUAGUGCUUGUCUAUUUUCGGCAGGGUACGGAGCUG---CUGGCUCUCGCGACCAUCGAAACCAACUUAACCAAAU------- .(.((((..((((((.(((-((.(((((((((.......)))).))))).))))))---))))).)))).).........................------- ( -25.90, z-score = -0.40, R) >droAna3.scaffold_12943 1568045 99 - 5039921 ACUUGAGCGGCUAGUUGGC-UUAGUGCUUGUCUAUUUUCGGCAGGGUACGGAGCUA---CUGGCUCUCGCGACCAACGAAGCAACCACAACACACAACCCAUU ....(((.(((((((.(((-((.(((((((((.......)))).))))).))))))---)))))))))((..........))..................... ( -29.10, z-score = -0.96, R) >dp4.chr4_group3 2320772 82 - 11692001 ACUUGAGCGAGUAGUUGGC-UUAGUACUUGUCUAUUUUUGGCAGGGUACGGAGCUGCUUUUGGCUCCCGCGAGAAAACUAUAU-------------------- ..........((((((..(-((.(((((((((.......)))).)))))((((((......))))))...)))..))))))..-------------------- ( -26.40, z-score = -1.68, R) >droPer1.super_8 3404392 82 - 3966273 ACUUGAGCGAGUAGUUGGC-UUAGUACUUGUCUAUUUUUGGCAGGGUACGGAGCUGCUUCUGGCUCCCGCGAGAAAACUAUAU-------------------- ..........((((((..(-((.(((((((((.......)))).)))))((((((......))))))...)))..))))))..-------------------- ( -26.40, z-score = -1.40, R) >droWil1.scaffold_180772 4394356 94 + 8906247 ACUUGAAUGAUCGAUGGGC-UUAGUACCAUUUUCGGCAGGGUACAGAACGGAGCAGA-CUCCGCUCUCGCGAGCAA-AAAGCUACUCCAACGUCUUG------ ........((.((.(((((-...(((((...........)))))(((.(((((....-))))).))).)).(((..-...)))...))).))))...------ ( -24.20, z-score = -0.14, R) >droVir3.scaffold_13246 192139 88 - 2672878 AGUUGAGCACGAGAUUGGCAUUAGUGCUCGUCUAUUUUUGGCAGAGUACGGAGCUA--GCUGGCUACCGGGAGAAAUCGGCAAUCGACAG------------- .(((((((.(((..((..(....(((((((((.......))).))))))((((((.--...)))).)).)..))..)))))..)))))..------------- ( -27.00, z-score = -1.10, R) >droGri2.scaffold_15126 4506549 86 - 8399593 AGUUAUGUGAGAGAUUAACUUUAGUACUUGUCUAUUUUUGGCAGGGUACGGACCU---GCUGGCUAACGCGAGAA-UCCGUAGUCGACAG------------- .(((.(((.((((((..((..........))..)))))).)))((.((((((...---.((.((....)).))..-)))))).)))))..------------- ( -25.10, z-score = -1.50, R) >consensus ACUUGAGCGACUAGUUGGC_UUAGUGCUUGUCUAUUUUCGGCAGGGUACGGAGCUG___CUGGCUCUCGCGACCAACGAAACCAACGUAACC_A_U_______ .......................(((((((((.......)))).)))))((((((......)))))).................................... (-12.22 = -12.75 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:16:19 2011