| Sequence ID | dm3.chr3L |
|---|---|
| Location | 5,514,983 – 5,515,075 |
| Length | 92 |
| Max. P | 0.651400 |
| Location | 5,514,983 – 5,515,075 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 84.27 |
| Shannon entropy | 0.27785 |
| G+C content | 0.47247 |
| Mean single sequence MFE | -25.13 |
| Consensus MFE | -18.20 |
| Energy contribution | -19.00 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.651400 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 5514983 92 + 24543557 UGCCAGUUCAGUUCGGAACACUCGAUAAAAU--GCUUCUGGCUGUCGGGGGAAAAAGAAUUUCCCACAGCUCAUUUAACUGGCUUCUCCUACAG .(((((((....((((.....))))..((((--(.....((((((.(((..(.......)..)))))))))))))))))))))........... ( -27.60, z-score = -2.45, R) >droEre2.scaffold_4784 8199505 91 + 25762168 UACCGGUUCCGUUCGCGACACUCGAUAAAAU--UUUCUUGGCUGUCGUGGGAAAA-GAAUUUCCCACAGCUCAUUUCGCUGGCUUCUUCCGCAG ..(((((.......((((((..(((.((...--.)).)))..))))((((((((.-...)))))))).)).......)))))............ ( -24.34, z-score = -1.33, R) >droYak2.chr3L 6078104 88 + 24197627 UACCAGCUCAGUUUGGGACACUCGA----AU--GCUCUUUGCUGUUGGGUUAAAAAGCAUUUCCCACAGUUCAUUUAACUGGCUUCACCCGCAA ....(((.(((((..((((....((----((--(((.((((((....)).)))).)))))))......))))....)))))))).......... ( -18.60, z-score = 0.11, R) >droSec1.super_2 5451286 94 + 7591821 UGCCAGGUCAGUUCGGAACACUCGAUAAAACUCGCUCUUGGCUGUCGGGGGAAAAAGAAUUUCCCACAGCUCAUUUAACUGGCUUCUCCUACAG .(((((((.(((((((.....))))....))).))....((((((.(((..(.......)..))))))))).......)))))........... ( -26.70, z-score = -1.78, R) >droSim1.chr3L 5030674 92 + 22553184 UGCCAGUUCAGUUCGGAACACUCGAUAAAAU--GCUCUUGGCUGUCGGGAGAAAAAGAAUUUCCCACAGCUCAUUUAACUGGCUUCUCCUACAG .(((((((....((((.....))))..((((--(.....((((((.((((((.......))))))))))))))))))))))))........... ( -28.40, z-score = -2.99, R) >consensus UGCCAGUUCAGUUCGGAACACUCGAUAAAAU__GCUCUUGGCUGUCGGGGGAAAAAGAAUUUCCCACAGCUCAUUUAACUGGCUUCUCCUACAG .(((((......((((.....))))..............((((((.((((((.......)))))))))))).......)))))........... (-18.20 = -19.00 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:05:22 2011