| Sequence ID | dm3.chr3L |
|---|---|
| Location | 5,498,077 – 5,498,163 |
| Length | 86 |
| Max. P | 0.512213 |
| Location | 5,498,077 – 5,498,163 |
|---|---|
| Length | 86 |
| Sequences | 13 |
| Columns | 86 |
| Reading direction | forward |
| Mean pairwise identity | 93.25 |
| Shannon entropy | 0.16625 |
| G+C content | 0.40244 |
| Mean single sequence MFE | -21.89 |
| Consensus MFE | -19.22 |
| Energy contribution | -19.31 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.512213 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 5498077 86 + 24543557 GCUUUUGUCCGGUGACCAUGGCAAUUAAAUCUAAAAUAUAAGCUGGGAUAUUGUGCAAGAAAAAUGCAAUUGCACAAUGCAGAGGC (((((((((((((............................)))))...(((((((((...........))))))))))))))))) ( -21.39, z-score = -1.08, R) >droSim1.chr3L 5013172 86 + 22553184 GCUUUUGUCCGGUGACCAUGGCAAUUAAAUCUAAAAUAUAAGCUGGGAUAUUGUGCAAGAAAAAUGCAAUUGCACAAUGCAGAGGC (((((((((((((............................)))))...(((((((((...........))))))))))))))))) ( -21.39, z-score = -1.08, R) >droSec1.super_2 5434354 86 + 7591821 GCUUUUGUCCGGUGACCAUGGCAAUUAAAUCUAAAAUAUAAGCUGGGAUAUUGUGCAAGAAAAAUGCAAUUGCACAAUGCAGAGGC (((((((((((((............................)))))...(((((((((...........))))))))))))))))) ( -21.39, z-score = -1.08, R) >droYak2.chr3L 6060071 86 + 24197627 GCUUUUGUCCGGUGACCAUGGCAAUUAAAUCUAAAAUAUAAGCCGGGAUAUUGUGCAAGAAAAAUGCAAUUGCACAAUGCAGAGGC (((((((((((....)..((((...................)))))))((((((((((...........))))))))))))))))) ( -23.91, z-score = -1.93, R) >droEre2.scaffold_4784 8182845 86 + 25762168 GCUUUUGUCCAGUGACCAUGGCAAUUAAAUCUAAAAUAUAAGCCGGGAUAUUGUGCAAGAAAAAUGCAAUUGCACAAUGCAGAGGC ((((((((.......((.((((...................))))))..(((((((((...........))))))))))))))))) ( -23.11, z-score = -1.81, R) >droAna3.scaffold_13337 10237036 86 - 23293914 GCUUUUGUCCGGUGACCAUGGCAAUUAAAUCUAAAAUAUAAGCUGGGAUAUUGUGAAAGAAAAAUGCAAUUGCACAAUGCAGAGGC ((((((((...(((......(((......((...(((((........)))))..))........))).....)))...)))))))) ( -15.24, z-score = 0.58, R) >dp4.chrXR_group6 5155822 86 - 13314419 GCUUUUGUCCGGUGACCAUGGCAAUUAAAUCUAAAAUAUAAGCUGGGAUAUUGUGCAAGAAAAAUGCAAUUGCACAAUGCAGAGGC (((((((((((((............................)))))...(((((((((...........))))))))))))))))) ( -21.39, z-score = -1.08, R) >droPer1.super_27 296785 86 + 1201981 GCUUUUGUCCGGUGACCAUGGCAAUUAAAUCUAAAAUAUAAGCUGGGAUAUUGUGCAAGAAAAAUGCAAUUGCACAAUGCAGAGGC (((((((((((((............................)))))...(((((((((...........))))))))))))))))) ( -21.39, z-score = -1.08, R) >droWil1.scaffold_180698 7306073 86 - 11422946 GCUUUUGUCCGGUGACCAUGGCAAUUAAAUCUAAAAUAUAAGCUGGGAUAUUGUGCAAGAAAAAUGCAAUUGCACAAUGCAGAGGC (((((((((((((............................)))))...(((((((((...........))))))))))))))))) ( -21.39, z-score = -1.08, R) >droVir3.scaffold_13049 11427944 86 + 25233164 GCUUUUGUCCGGUGGCCAUGGCAAUUAAAUCUAAAAUAUAAGCUGGGAUAUUGUGCAAGAAAAAUGCAAUUGCACAAUGCAGAGGC (((((((((((((.((....))..(((....))).......)))))...(((((((((...........))))))))))))))))) ( -24.20, z-score = -1.55, R) >droMoj3.scaffold_6680 15361685 86 - 24764193 GCUUUUGUCCGGUGGCCAUGGCAAUUAAAUCUAAAAUAUAAGCUGGGAUAUUGUGCAAGAAAAAUGCAAUUGCACAAUGCAGAGGC (((((((((((((.((....))..(((....))).......)))))...(((((((((...........))))))))))))))))) ( -24.20, z-score = -1.55, R) >droGri2.scaffold_15110 16643386 86 - 24565398 GCUUUUGUCCAGUGGCCAUGGCAAUUAAAUCUAAAAUAUAAGCUGGGAUAUUGUGCAAGAAAAAUGCAAUUGCACAAUGCAGAGGC (((((((((((((.((....))..(((....))).......)))))...(((((((((...........))))))))))))))))) ( -24.90, z-score = -1.80, R) >triCas2.ChLG6 2982616 84 + 13544221 GCUUUUGGCCGACGAUUAUGGCACAAAAAUCCAGGAAAAAGGCCGGGAUUAAGUGGAGGAAAAUUCGCAUU--AGGAGGUAAAGGC (((((((.((..(..............(((((.((.......)).)))))..(((((......)))))...--.)..))))))))) ( -20.70, z-score = -1.49, R) >consensus GCUUUUGUCCGGUGACCAUGGCAAUUAAAUCUAAAAUAUAAGCUGGGAUAUUGUGCAAGAAAAAUGCAAUUGCACAAUGCAGAGGC (((((((((((((............................)))))...(((((((((...........))))))))))))))))) (-19.22 = -19.31 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:05:19 2011