Locus 6314

Sequence ID	dm3.chr3L
Location	5,470,862 – 5,470,922
Length	60
Max. P	0.939474

overview

Window 1

Location	5,470,862 – 5,470,922
Length	60
Sequences	5
Columns	60
Reading direction	reverse
Mean pairwise identity	90.33
Shannon entropy	0.17390
G+C content	0.43000
Mean single sequence MFE	-12.42
Consensus MFE	-10.94
Energy contribution	-10.74
Covariance contribution	-0.20
Combinations/Pair	1.22
Mean z-score	-2.03
Structure conservation index	0.88
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	1.43
SVM RNA-class probability	0.939474
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 5470862 60 - 24543557
CCAUUGGCUAAAAUACCCAAGAAAUUGGUACAAAUGAACUGUUUGAUUACCACAACCGAG
...((((.........((((....))))..(((((.....)))))..........)))). (  -9.60, z-score =  -1.46, R)
>droEre2.scaffold_4784 8156010 60 - 25762168
CCUUUGGCCAAGACUCCCAAGAAAUCGGUGCAAGUGAAAUAUUUGAUUACCACAGCCGAG
...(((((............(....)((((((((((...))))))..))))...))))). (  -9.70, z-score =  -0.33, R)
>droYak2.chr3L 6031795 60 - 24197627
CCUUUGGCUAAGAUUCCCAAGAAAUCGGUACAAAUAAACUGUUUGAUUACCACAGCCGAG
...((((((..((((.......))))(((((((((.....)))))..))))..)))))). ( -14.20, z-score =  -2.93, R)
>droSec1.super_2 5407168 60 - 7591821
CCAUUGGCUAAGAUGACCAAGAAAUCGGUACAAAUGAACUGUUUGAUUACCACAGCCGAG
...((((((..(((.........)))(((((((((.....)))))..))))..)))))). ( -14.30, z-score =  -2.89, R)
>droSim1.chr3L 4984413 60 - 22553184
CCAUUGGCUAAGAUGCCCAAGAAAUCGGUACAAAUGAACUGUUUGAUUACCACAGCCGAG
...((((((..(((.........)))(((((((((.....)))))..))))..)))))). ( -14.30, z-score =  -2.54, R)
>consensus
CCAUUGGCUAAGAUGCCCAAGAAAUCGGUACAAAUGAACUGUUUGAUUACCACAGCCGAG
...((((((..(((.........)))(((((((((.....)))))..))))..)))))). (-10.94 = -10.74 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:05:16 2011