| Sequence ID | dm3.chr3L |
|---|---|
| Location | 5,462,893 – 5,462,944 |
| Length | 51 |
| Max. P | 0.906666 |
| Location | 5,462,893 – 5,462,944 |
|---|---|
| Length | 51 |
| Sequences | 6 |
| Columns | 56 |
| Reading direction | reverse |
| Mean pairwise identity | 72.91 |
| Shannon entropy | 0.49574 |
| G+C content | 0.45501 |
| Mean single sequence MFE | -12.53 |
| Consensus MFE | -6.24 |
| Energy contribution | -5.80 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.54 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.19 |
| SVM RNA-class probability | 0.906666 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 5462893 51 - 24543557 CAGAAUCCAAAGUUGUACACUAAUGUGUGGAA--GUCAGAAGGCAGAUUCAGG--- ..(((((.....((.(((((....))))).))--(((....))).)))))...--- ( -12.60, z-score = -2.26, R) >droSim1.chr3L 4976458 51 - 22553184 CAGAAUCCAAAGUUGUACACUAAUGUGUGGAA--GUCAGAAGGCAGAUUCAGG--- ..(((((.....((.(((((....))))).))--(((....))).)))))...--- ( -12.60, z-score = -2.26, R) >droSec1.super_2 5399285 51 - 7591821 CAGAAUCCAAAGUUGUACACUAAUGUGUGGAA--GUCAGAAGGCAGAUUCAGG--- ..(((((.....((.(((((....))))).))--(((....))).)))))...--- ( -12.60, z-score = -2.26, R) >droYak2.chr3L 6023568 51 - 24197627 CAGAAUCCAAAGUUGUAAACUAAUGUGUGGAA--GUCAUACGGCAGAUUCAGG--- ..(((((...(((.....)))..((((((...--..))))))...)))))...--- ( -8.90, z-score = -0.87, R) >droEre2.scaffold_4784 8148354 51 - 25762168 CAGAAUCCAAAGUUGCACACUAAUGUGUGGCA--GUCAUACGGCAGAUUCAGG--- ..(((((....((..((((....))))..)).--(((....))).)))))...--- ( -16.10, z-score = -3.07, R) >droWil1.scaffold_180698 7258543 56 + 11422946 CGAUCUAAAUAGGUUUUGGCCACCCAACGAAACCCCCUCUCUCUAGAGGCGGCACC ...........(((((((.........)))))))((((((....))))).)..... ( -12.40, z-score = -0.47, R) >consensus CAGAAUCCAAAGUUGUACACUAAUGUGUGGAA__GUCAGAAGGCAGAUUCAGG___ ..(((((.....(..((((....))))..)....(((....))).)))))...... ( -6.24 = -5.80 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:05:15 2011