| Sequence ID | dm3.chr3L |
|---|---|
| Location | 5,445,685 – 5,445,735 |
| Length | 50 |
| Max. P | 0.949999 |
| Location | 5,445,685 – 5,445,735 |
|---|---|
| Length | 50 |
| Sequences | 8 |
| Columns | 56 |
| Reading direction | reverse |
| Mean pairwise identity | 61.36 |
| Shannon entropy | 0.75572 |
| G+C content | 0.39102 |
| Mean single sequence MFE | -11.22 |
| Consensus MFE | -4.14 |
| Energy contribution | -4.49 |
| Covariance contribution | 0.35 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.56 |
| SVM RNA-class probability | 0.949999 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 5445685 50 - 24543557 UUUGUUUCGGGUUUCGAAGCAAAACAGUUAACAUAG------UAAGGUUGCAUCUA (((((((((.....)))))))))...((.(((....------....)))))..... ( -9.10, z-score = -1.62, R) >droEre2.scaffold_4784 8139933 56 - 25762168 UUUGUUUCGUGUUUCGAAGCAAAACAGUUAACACAGUUGUACUUAGGGCUUAUUUA (((((((((.....)))))))))...........((((.(....).))))...... ( -9.20, z-score = -0.54, R) >droYak2.chr3L 6014931 50 - 24197627 UUUGUUUCGGGUUUCGAAGCAAAACAGUUAACAUAG------UCAGGUUACAUCUA (((((((((.....)))))))))...((.(((....------....)))))..... ( -9.10, z-score = -2.42, R) >droSec1.super_2 5390803 50 - 7591821 UUUGUUUCGGGUUUCGAAGCAAAACAGUUAGCAUAG------UAAGGUUACAUCUA (((((((((.....)))))))))...((.(((....------....)))))..... ( -9.10, z-score = -2.03, R) >droSim1.chr3L 17619476 50 + 22553184 UUUGUUUCGGGUUUCGAAGCAAAACAGUUAGCAUAG------UAAGGUUACAUCUA (((((((((.....)))))))))...((.(((....------....)))))..... ( -9.10, z-score = -2.03, R) >droPer1.super_27 241774 54 - 1201981 UUGGUUUCGGACCACGAACGGUAUUGGUGGGGCCACCAGAAACUA--UUAUUUUUA .(((((((..(((......)))..(((((....))))))))))))--......... ( -16.80, z-score = -2.25, R) >dp4.chrXR_group6 4834498 54 + 13314419 UUGGUUUCGGACCACGAACGGUAUUGGUGGGGCCACCAGAAACUA--UUAUUUUUA .(((((((..(((......)))..(((((....))))))))))))--......... ( -16.80, z-score = -2.25, R) >anoGam1.chr3L 38199532 50 + 41284009 UUUGCUGGUGGUGCAGGGGC--AUCUGUAAAAAUAUC----GUUUGCUUGCAUCCA .......(.((((((..(((--(..((.........)----)..))))))))))). ( -10.60, z-score = 0.36, R) >consensus UUUGUUUCGGGUUUCGAAGCAAAACAGUUAACAUAG______UUAGGUUACAUCUA ...((((((.....)))))).................................... ( -4.14 = -4.49 + 0.35)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:05:13 2011