| Sequence ID | dm3.chr3L |
|---|---|
| Location | 5,427,730 – 5,427,827 |
| Length | 97 |
| Max. P | 0.872187 |
| Location | 5,427,730 – 5,427,827 |
|---|---|
| Length | 97 |
| Sequences | 11 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 71.41 |
| Shannon entropy | 0.59749 |
| G+C content | 0.52236 |
| Mean single sequence MFE | -18.68 |
| Consensus MFE | -14.24 |
| Energy contribution | -14.14 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.06 |
| Mean z-score | -0.49 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.01 |
| SVM RNA-class probability | 0.872187 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 5427730 97 + 24543557 ---------CUGACUACGCCCCUGGU-CCACCAAUCUGCACCCCCC--UUGACAAUAAUUCACGUCACGUACCUGCAAUAAAGUCACUUGGCGGCGUUGCACGUAUGAC ---------.((((...((...(((.-...)))....)).......--.(((.......))).))))(((((.((((((...(((....)))...)))))).))))).. ( -21.70, z-score = -0.84, R) >droSim1.chr3L 4942328 97 + 22553184 ---------CUAACUACGCCCCUGGU-CCAACAAUCUGCACCCCCC--UUGACAAUAAUUCACGUCACGUACCUGCAAUAAAGUCACUUGGCGGCGUUGCACGUAUGAC ---------..............(((-.((......)).)))....--.((((..........))))(((((.((((((...(((....)))...)))))).))))).. ( -19.60, z-score = -0.50, R) >droSec1.super_2 5372895 97 + 7591821 ---------CUAACUACGCCC-UGGC-CCAACAAUCUGCACCCCCCC-UUGACAAUAAUUCACGUCACGUACCUGCAAUAAAGUCACUUGGCGGCGUUGCACGUAUGAC ---------........((..-..))-....................-.((((..........))))(((((.((((((...(((....)))...)))))).))))).. ( -19.00, z-score = -0.29, R) >droYak2.chr3L 5996140 101 + 24197627 ------CCACUGACUACGCCCCUGGA-CCACCAAUCGCCACCCCCCC-UUGACAAUAAUUCACGUCACGUACCUGCAAUAAAGUCACUUGGCGGCGUUGCACGUAUGAC ------....((((...((...(((.-...)))...)).........-.(((.......))).))))(((((.((((((...(((....)))...)))))).))))).. ( -20.70, z-score = -0.55, R) >droEre2.scaffold_4784 8121087 93 + 25762168 --------CCUGACCACGCCCCUGCU-CCACCGA-----ACCCCCC--UUGACAAUAAUUCACGUCACGUACCUGCAAUAAAGUCACUUGGCGGCGUUGCACGUAUGAC --------..((((...((....)).-.......-----.......--.(((.......))).))))(((((.((((((...(((....)))...)))))).))))).. ( -17.70, z-score = -0.33, R) >droAna3.scaffold_13337 10177290 107 - 23293914 --CUGCCCCCUUCCCUUGACUGUACCACCACUACCCCCCACUCCCCUUUUGACAAUAAUUCACGUCACGUACCUGCAAUAAAGUCACUUGCCGGCGUUGCACGUAUGAC --...............................................((((..........))))(((((.((((((...(((.......))))))))).))))).. ( -14.50, z-score = -0.65, R) >dp4.chrXR_group6 4809052 76 - 13314419 ---------------------------------CCUGCUCCUCCUGCACUGACAAUAAUUCACGUCACGUACCUGCAAUAAAGUCACUUGCCGGCGUUGCACGUAUGAC ---------------------------------..(((.......))).((((..........))))(((((.((((((...(((.......))))))))).))))).. ( -16.10, z-score = -0.92, R) >droPer1.super_27 216940 76 + 1201981 ---------------------------------CCUGUUCCUCCUGCACUGACAAUAAUUCACGUCACGUACCUGCAAUAAAGUCACUUGCCGGCGUUGCACGUAUGAC ---------------------------------................((((..........))))(((((.((((((...(((.......))))))))).))))).. ( -14.40, z-score = -0.20, R) >droWil1.scaffold_180698 4191974 109 + 11422946 CAUCUCAUCUCAUCGUUUCGAGGCUCGUCUGCUCAUUCCACUCACCUAUUGACAAUAAUUCACGUCACGUACCUGCAAUAAAGUCACUUGCCGGCAUUGCACGUAUGAC ........(((........)))((......)).................((((..........))))(((((.((((((...(((.......))))))))).))))).. ( -17.20, z-score = 0.23, R) >droMoj3.scaffold_6680 9463386 83 + 24764193 -----------------------CGCGCUG---CGCCAUGCCUACACACUGACAAUAAUUCACGUCACGUACCUGCAAUAAAGUCACUUGCCGGCAUUGCACGUAUGAC -----------------------.(((.((---((..(((((.....((((((..........)))).))....((((.........)))).))))))))))))..... ( -17.50, z-score = 0.32, R) >droVir3.scaffold_13049 11360721 86 + 25233164 --------------------AGGGCUGCCU---CAGGCGGCCCACACAUUGACAAUAAUUCACGUCACGUAGCUGCAAUAAAGUCACUUGCCGGCAUUGCACGUAUGAC --------------------.((((((((.---..))))))))......((((..........))))((((..((((((...(((.......)))))))))..)))).. ( -27.10, z-score = -1.66, R) >consensus _________CU_AC_ACGCCC_UGGC_CCA_CACUCGCCACCCCCCC_UUGACAAUAAUUCACGUCACGUACCUGCAAUAAAGUCACUUGCCGGCGUUGCACGUAUGAC .................................................((((..........))))(((((.((((((...(((.......))))))))).))))).. (-14.24 = -14.14 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:05:09 2011