| Sequence ID | dm3.chr3L |
|---|---|
| Location | 5,423,790 – 5,423,845 |
| Length | 55 |
| Max. P | 0.586135 |
| Location | 5,423,790 – 5,423,845 |
|---|---|
| Length | 55 |
| Sequences | 5 |
| Columns | 61 |
| Reading direction | reverse |
| Mean pairwise identity | 83.10 |
| Shannon entropy | 0.29229 |
| G+C content | 0.44727 |
| Mean single sequence MFE | -15.60 |
| Consensus MFE | -10.66 |
| Energy contribution | -10.26 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.586135 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 5423790 55 - 24543557 UCGUGCCGCUGUCUUUGCCGCGGAAGUGCUGCACAAAAAGUGAAAAUAAUAUAAA------ ......((((.....((((((....)))..))).....)))).............------ ( -10.80, z-score = -0.21, R) >droSim1.chr3L 4938394 55 - 22553184 UCGUGCCGCUGUCUUUGCCGCGGAAGUGCUGCACAAAAAGCGAAAAUAAUAUAAA------ ......((((.....((((((....)))..))).....)))).............------ ( -12.70, z-score = -0.49, R) >droSec1.super_2 5368986 55 - 7591821 UCGUGCCGCUGUCUUUGCCGCGGAAGUGCUGCACAAAAAGCGAAAAUAAUAUAAA------ ......((((.....((((((....)))..))).....)))).............------ ( -12.70, z-score = -0.49, R) >droEre2.scaffold_4784 8117209 55 - 25762168 UCGUGCCGCUGUCUUUGCCGCGGAAGUGCAGCAGAAAUAGCGAAAAUAAUACAAG------ ......((((((.((((((((....)))..))))).)))))).............------ ( -18.10, z-score = -2.48, R) >droPer1.super_27 213277 60 - 1201981 UCGUGCUUCUGCUUUUGCCGCGGAAGUGGCGUACAAA-AGCAAAAGCAAAAAAAAAAAAAA ...(((((.((((((((((((....)))))....)))-)))).)))))............. ( -23.70, z-score = -4.85, R) >consensus UCGUGCCGCUGUCUUUGCCGCGGAAGUGCUGCACAAAAAGCGAAAAUAAUAUAAA______ ......((((.....((((((....)))..))).....))))................... (-10.66 = -10.26 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:05:08 2011