| Sequence ID | dm3.chr3L |
|---|---|
| Location | 5,407,710 – 5,407,803 |
| Length | 93 |
| Max. P | 0.974479 |
| Location | 5,407,710 – 5,407,803 |
|---|---|
| Length | 93 |
| Sequences | 7 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 69.71 |
| Shannon entropy | 0.57296 |
| G+C content | 0.49422 |
| Mean single sequence MFE | -23.39 |
| Consensus MFE | -12.77 |
| Energy contribution | -12.30 |
| Covariance contribution | -0.47 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.91 |
| SVM RNA-class probability | 0.974479 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 5407710 93 + 24543557 GAACUUGCUCCCUUUUACCUCCGUGGC---CACCGAAA-----CUAUUGCUUGUAAGUCGAUCAUGUGUUUGUAUCUUAAUCUGAUAAAUACGUGGCCGAG .......................((((---((((((.(-----(........))...))).....((((((((...........))))))))))))))).. ( -19.00, z-score = -1.55, R) >droSim1.chr3L 4924001 92 + 22553184 GAACCCGCUCCCUUUUACCUCCGUGGC---CAGCCAA------CUGCUGCUAGUAAGUCGAUCAUGUGUUUGUAUCUUAAUCUGAUAAAUACGUGGCCGGG ...(((.......(((((.....((((---.(((...------..))))))))))))..(..(((((((((((...........)))))))))))..)))) ( -22.10, z-score = -0.99, R) >droSec1.super_2 5353204 92 + 7591821 GAACUCGCUCCCUUUUACCUCCGUGGC---CAGCCAA------CUGCUGCUAGUAAGUCGAUCAUGUGUUUGUAUCUUAAUCUGAUAAAUACGUGGCCGGC .......................((((---.(((...------..)))))))....((((..(((((((((((...........)))))))))))..)))) ( -21.90, z-score = -1.10, R) >droYak2.chr3L 5974954 92 + 24197627 GAACUUGCUCCCUUUUACCUCCGUGGC---CGCUCAA------CUGCUGCCAGUAAGUCGAUCAUGUGUUUGUAUCUUAAUCUGAUAAAUACGUGGCCGGG ..(((((((.......((....))(((---.((....------..)).))))))))))((..(((((((((((...........)))))))))))..)).. ( -25.00, z-score = -2.26, R) >droEre2.scaffold_4784 8100940 81 + 25762168 -----------GAACUUGCUCCGUUGC---CGCCCAA------CUGCAGCCAGUAAGUCGAUCAUGUGUUUGUAUCUUAAUCUGAUAAAUACGUGGCCGGG -----------..(((((((..(((((---.(.....------).))))).)))))))((..(((((((((((...........)))))))))))..)).. ( -24.20, z-score = -2.35, R) >droAna3.scaffold_13337 10158260 101 - 23293914 AAACUUGGUCCGCUUCACCUUUACGCCGGAUACCCGGAACCGUCCCUCUCCAACCACUCGAUCAUGUGUUUGUAUCUUAAUCUGAUAAAUACGUGGCCGGG ......((((((.....((........)).....))).)))...............((((..(((((((((((...........)))))))))))..)))) ( -23.90, z-score = -0.92, R) >droVir3.scaffold_13049 11339534 72 + 25233164 -------------------GGUGUGGC---UGGUGGGG-------CGACCCGCUGGCCUGAUCAUGUGUUUCUAUCUUAAUCUGAUAAGUACGUGGGGAGA -------------------.....(((---..(((((.-------...)))))..)))...(((((((....((((.......))))..)))))))..... ( -27.60, z-score = -2.45, R) >consensus GAACUUGCUCCCUUUUACCUCCGUGGC___CACCCAA______CUGCUGCCAGUAAGUCGAUCAUGUGUUUGUAUCUUAAUCUGAUAAAUACGUGGCCGGG .........................................................(((..((((((((..((((.......))))))))))))..))). (-12.77 = -12.30 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:05:04 2011