| Sequence ID | dm3.chr3L |
|---|---|
| Location | 5,398,371 – 5,398,467 |
| Length | 96 |
| Max. P | 0.566438 |
| Location | 5,398,371 – 5,398,467 |
|---|---|
| Length | 96 |
| Sequences | 12 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 79.26 |
| Shannon entropy | 0.41935 |
| G+C content | 0.41252 |
| Mean single sequence MFE | -26.48 |
| Consensus MFE | -16.08 |
| Energy contribution | -16.96 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.566438 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 5398371 96 + 24543557 CAGCAACUUAAGUAGCUCAAUAAAUCUUGAG--CUUAACAUUUGUUGAAGCUUUUGCCAGUUGGCAAACGUGACUUGUGUGCGACACAAAUGUGGGUA----------------- ..(((...(((((.((((((......)))))--)(((((....))))).((.((((((....)))))).)).)))))..)))..(((....)))....----------------- ( -27.50, z-score = -1.33, R) >droSim1.chr3L 4914591 96 + 22553184 CAGCAACUUAAGUAGCUCAAUAAAUCUUGAG--CUUAACAUUUGUUGAAGCUUUUGCCAGUUGGCAAACGUGACUUGUGUGCGACACAAAUGUGGGUA----------------- ..(((...(((((.((((((......)))))--)(((((....))))).((.((((((....)))))).)).)))))..)))..(((....)))....----------------- ( -27.50, z-score = -1.33, R) >droSec1.super_2 5344123 96 + 7591821 CAGCAACUUAAGUAGCACAAUAAAUCUUGAG--CUUAACAUUUGUUGAAGCUUUUGCCAGUUGGCAAACGUGACUUGUGUGCGACACAAAUGUGGGUA----------------- ..(((...(((((..(((..........(((--((((((....)))).)))))(((((....)))))..))))))))..)))..(((....)))....----------------- ( -25.30, z-score = -0.48, R) >droYak2.chr3L 5965649 96 + 24197627 CAGCAACUUAAGUAGCUCAAUAAAUCUUGAG--CUUAACAUUUGUUGAAGCUUUUGCCAGUUGGCAAACGUGACUUGUGUGCGACACCAAUGUGAGUA----------------- ..(((...(((((.((((((......)))))--)(((((....))))).((.((((((....)))))).)).)))))..)))..(((....)))....----------------- ( -26.30, z-score = -1.19, R) >droEre2.scaffold_4784 8091860 96 + 25762168 CAGCAACUUAAGUAGCUCAAUAAAUCUUGAG--CUUAACAUUUGUUGAAGCUUUUGCCAGUUGGCAAACGUGACUUGUGUGCGACACAAAUGUGGGUA----------------- ..(((...(((((.((((((......)))))--)(((((....))))).((.((((((....)))))).)).)))))..)))..(((....)))....----------------- ( -27.50, z-score = -1.33, R) >droAna3.scaffold_13337 10148560 96 - 23293914 CAGCAACUUAAGUAGCUCAAUAAAUCUUGGG--CUUAACAUUUGUUGAAGCUUUUGCCAGUUGGCAAACGUGACUGGAGUGCGACAGAAAUGUGUGAG----------------- ..(((.(((.(((.((((((......)))))--)(((((....))))).((.((((((....)))))).)).))).)))))).(((....))).....----------------- ( -26.80, z-score = -1.14, R) >dp4.chrXR_group6 5058519 113 - 13314419 CAGCAACUUAAGUAGCUCAAUAAAUCUUGAG--CUUAACAUUUGUUGAAGCUUUUGCCAGUUGGCAAACGUGACUUGAGUGCGACACAACCAACACACACUUCUGUCUGUCUGUA ..(((.(((((((.((((((......)))))--)(((((....))))).((.((((((....)))))).)).))))))))))......((..(((.(((....))).)))..)). ( -31.50, z-score = -1.67, R) >droPer1.super_27 181125 113 + 1201981 CAGCAACUUAAGUAGCUCAAUAAAUCUUGAG--CUUAACAUUUGUUGAAGCUUUUGCCAGUUGGCAAACGUGACUUGAGUGCGACACAACCAACACACACUUCUGUCUGUCUGUA ..(((.(((((((.((((((......)))))--)(((((....))))).((.((((((....)))))).)).))))))))))......((..(((.(((....))).)))..)). ( -31.50, z-score = -1.67, R) >droWil1.scaffold_180698 4289772 96 + 11422946 CAAAAAUUUAAGUGGGUCAAUAAAUCUUUAGGCCUUAACAUAUGU--ACGUACUUACCGUAUGUCUGCUGAGAGACCUUUUUGGCAUAAACGUGACUA----------------- ..........((((((((............))))).....(((((--((((((.....)))))).(((..((((...))))..)))...)))))))).----------------- ( -16.90, z-score = 0.20, R) >droVir3.scaffold_13049 11327682 88 + 25233164 CGGAAACUUAAGUAUCUCAAUAAAUCUUGAG--CUUAACAUUUGUUGAAGCUUUUGCCAGUGGGUAAACGUGACUUGAGUGCGACACAUG------------------------- ((...((((((((...(((((((((.(((..--..))).))))))))).((.((((((....)))))).)).)))))))).)).......------------------------- ( -21.30, z-score = -1.39, R) >droMoj3.scaffold_6680 15258085 88 - 24764193 CGGCAGCUUAAGUAGCUCAAUAAAUCUUGAG--CUUAACAUUUGCUGAUGCUUCCAGCAGUUGGCGAACGUGACUGGAGUGCGACACAUG------------------------- ((((((.......(((((((......)))))--))......)))))).((((((((((((((....))).)).)))))).))).......------------------------- ( -27.02, z-score = -1.29, R) >droGri2.scaffold_15110 16545214 88 - 24565398 CGGCAACUUAAGUAGCUCAAUAAAUCUUGAG--CUUAACAUUUGUUGAAGCUUUUGCCAGUUGGCAAACGUGACUUGAGUGCGACACAUG------------------------- ..(((.(((((((.((((((......)))))--)(((((....))))).((.((((((....)))))).)).))))))))))........------------------------- ( -28.70, z-score = -3.06, R) >consensus CAGCAACUUAAGUAGCUCAAUAAAUCUUGAG__CUUAACAUUUGUUGAAGCUUUUGCCAGUUGGCAAACGUGACUUGAGUGCGACACAAAUGUGAGUA_________________ ..(((.....(((((((((((((((.((((....)))).))))))))).)))((((((....))))))....)))....)))................................. (-16.08 = -16.96 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:04:59 2011