| Sequence ID | dm3.chr3L |
|---|---|
| Location | 5,396,232 – 5,396,328 |
| Length | 96 |
| Max. P | 0.698046 |
| Location | 5,396,232 – 5,396,328 |
|---|---|
| Length | 96 |
| Sequences | 7 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 86.86 |
| Shannon entropy | 0.26353 |
| G+C content | 0.36585 |
| Mean single sequence MFE | -22.61 |
| Consensus MFE | -16.82 |
| Energy contribution | -16.56 |
| Covariance contribution | -0.26 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.698046 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 5396232 96 - 24543557 ----GGGUAGGUUAUCCAACACAGAACAAGGAC-GAGCAAAUUCUGUAAUCAGAAUUAUUGUUCAAAUUGUCGUAAUGUUUAUCCAAUUUGUUUUGUUGGU ----(((((...)))))..((((((((..((((-((...(((((((....))))))).))))))((((((..(((.....))).)))))))))))).)).. ( -22.60, z-score = -2.01, R) >droSim1.chr3L 4912443 95 - 22553184 ----GGGGAGGUUA-ACAACAGAGAACAAGGAC-GAGCAAAUUCUGUAAUCAGAAUUAUUGUUCAAAUUGUCGUAAUGUUUAUCCAAUUUGUUUUGUUGGU ----..........-.((((((((.....((((-((...(((((((....))))))).))))))((((((..(((.....))).)))))).)))))))).. ( -20.60, z-score = -1.35, R) >droSec1.super_2 5342025 95 - 7591821 ----GGGGAGGUUA-ACAGCAGAGAACAAGGAC-GAGCAAAUUCUGUAAUCAGAAUUAUUGUUCAAAUUGUCGUAAUGUUUAUCCAAUUUGUUUUGUUGGU ----..........-.((((((((.....((((-((...(((((((....))))))).))))))((((((..(((.....))).)))))).)))))))).. ( -20.60, z-score = -1.34, R) >droYak2.chr3L 5963573 95 - 24197627 ----GGGGUGGUUA-CCAACGGAGGACAAGGAC-GAGCAAAUUCUGUAAUCAGAAUUAUUGUUCAAAUUGUCGUAAUGUUUAUCCAAUUUGUUUUGUUGGU ----.........(-((((((((((((((....-((((((((((((....))))))..))))))...)))))....((......)).....)))))))))) ( -24.60, z-score = -1.89, R) >droEre2.scaffold_4784 8089734 95 - 25762168 ----GGGGUGGUUA-CCAGCAGAGAACAAGGAC-GAGUAAAUUUUGUAAUCAGAAUUAUUGUUCAAAUUGUCGUAAUGUUUAUCCAAUUUGUUUUGUUGGU ----.........(-(((((((((.....((((-((...(((((((....))))))).))))))((((((..(((.....))).)))))).)))))))))) ( -21.40, z-score = -1.72, R) >droAna3.scaffold_13337 10146889 100 + 23293914 GGGAGGGCCAACAGGACGACAGAGGACAAGGAC-GAGCAAAUUCUGUAAUCAGAAUUAUUGUUCAAAUUGUUGUAAUGUUUAUCCAAUUUGUUUUGUUGGU ......(((((((((((((...(.(((((....-((((((((((((....))))))..))))))...))))).)..((......))..))))))))))))) ( -28.60, z-score = -2.77, R) >droPer1.super_27 1060284 91 + 1201981 ----------GUGAGGAUUCGGGGGGAGGGGAUGGAGCAAAUUCUGUAAUCAGAAUUAUUGUUCAAAUUGUCGUAAUGUUUAUCCAAUUUGUUUUGUUGGC ----------....((((.((..(.((.((....((((((((((((....))))))..))))))...)).)).)..))...))))................ ( -19.90, z-score = -1.02, R) >consensus ____GGGGAGGUUA_ACAACAGAGAACAAGGAC_GAGCAAAUUCUGUAAUCAGAAUUAUUGUUCAAAUUGUCGUAAUGUUUAUCCAAUUUGUUUUGUUGGU ................((((((((..........((((((((((((....))))))..))))))((((((..(((.....))).)))))).)))))))).. (-16.82 = -16.56 + -0.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:04:58 2011