| Sequence ID | dm3.chr3L |
|---|---|
| Location | 5,379,994 – 5,380,091 |
| Length | 97 |
| Max. P | 0.889050 |
| Location | 5,379,994 – 5,380,091 |
|---|---|
| Length | 97 |
| Sequences | 12 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 91.84 |
| Shannon entropy | 0.17817 |
| G+C content | 0.38766 |
| Mean single sequence MFE | -28.30 |
| Consensus MFE | -20.14 |
| Energy contribution | -19.43 |
| Covariance contribution | -0.71 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.57 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.09 |
| SVM RNA-class probability | 0.889050 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 5379994 97 - 24543557 AAAUUGAUGAGCGUGUA-AACAUGUGUCUGUGCGCUUUUAUUUAUGGAUUUCCAUAACAUUCCGGCGUAACAUAUGUGUCUGAGCCG--UUGAUUGAAGC .(((..(((.((.....-.((((((((...((((((...((((((((....)))))).))...))))))))))))))......))))--)..)))..... ( -29.90, z-score = -3.06, R) >droSim1.chr3L 4896019 97 - 22553184 AAAUUGAUGAGCGUGUA-AACAUGUGUCUGUGCGCUUUUAUUUAUGGAUUUCCAUAACAAUCCAGCGUAACAUAUGUGUCUGAGCCG--UUGAUUGAAGC .(((..(((.((.....-.((((((((...((((((.....((((((....))))))......))))))))))))))......))))--)..)))..... ( -29.90, z-score = -3.34, R) >droSec1.super_2 5325664 97 - 7591821 AAAUUGAUGAGCGUGUA-AACAUGUGUCUGUGCGCUUUUAUUUAUGGAUUUCCAUAACAAUCCGGCGUAACAUAUGUGUCUGAGCCG--UUGAUUGAAGC .(((..(((.((.....-.((((((((...((((((.....((((((....))))))......))))))))))))))......))))--)..)))..... ( -29.90, z-score = -3.08, R) >droYak2.chr3L 5947052 98 - 24197627 AAAUUGAUGAGCGUGUA-AACAUGUGUCUGUGCGCUUUUAUUUAUGGAUUUCCAUAACAAUCCGGCGUAACAUAUGUGUCUGAGCCG-UUUGAUUGAAGC ........(((((..((-.((....)).))..)))))....((((((....))))))(((((((((...(((....)))....))))-...))))).... ( -26.60, z-score = -1.86, R) >droEre2.scaffold_4784 8071961 97 - 25762168 AAAUUGAUGAGCGUGUA-AACAUGUGUCUGUGCGCUUUUAUUUAUGGAUUUCCAUAACAAUCCGGCGUAACAUAUGUGUCUGAGCCG--UUGAUUGAAGC .(((..(((.((.....-.((((((((...((((((.....((((((....))))))......))))))))))))))......))))--)..)))..... ( -29.90, z-score = -3.08, R) >droAna3.scaffold_13337 10129863 97 + 23293914 AAAUUGAUGAGCGUGUA-AACAUGUGUCUGUGUGCUUUUAUUUAUGGAUUUCCAUAACAAUCCAGCGUAACAUAUGUGUCUGAGCCG--UUGAUUGAAGC .(((..(((.((.....-.((((((((...((((((.....((((((....))))))......))))))))))))))......))))--)..)))..... ( -25.10, z-score = -1.95, R) >dp4.chrXR_group6 8276413 97 - 13314419 AAAUUGAUGAGCGUGUA-AACAUGUGUCUGUGCGCUUUUAUUUAUGGAUUUCCAUAACAAUCCAGCGUAGCAUAUGUGUCUGAGCUG--UUGAUUGAAGC .(((..((.(((.....-.((((((((...((((((.....((((((....))))))......))))))))))))))......))))--)..)))..... ( -28.60, z-score = -2.48, R) >droPer1.super_27 1041356 97 + 1201981 AAAUUGAUGAGCGUGUA-AACAUGUGUCUGUGCGCUUUUAUUUAUGGAUUUCCAUAACAAUCCAGCGUAGCAUAUGUGUCUGAGCUG--UUGAUUGAAGC .(((..((.(((.....-.((((((((...((((((.....((((((....))))))......))))))))))))))......))))--)..)))..... ( -28.60, z-score = -2.48, R) >droWil1.scaffold_180698 4265594 100 - 11422946 AAAUUGAUGAGCUUGUAGAACAUGUGUCUGUGCGCUUUUAUUUAUGGUUUUCCAUAACAAUUCAGCGUAACAUAUGUGUCUGAGCUUUGUUGAUUGAAGC .(((..(..(((((..(((((((((((...((((((.....((((((....))))))......)))))))))))))).))))))).)..)..)))..... ( -30.20, z-score = -3.28, R) >droGri2.scaffold_15110 8037001 97 - 24565398 GAAUUGAUGAGCUUGUA-AACAUGUGCUUGCGCGCUUUUAUUUAUGGAUUUCCAUAACAAUUCAGCGCUGCGUAUGCGUCGCAGCUU--UUGAUUGAAGA ((((((..((((.((((-(.(....).))))).))))....((((((....))))))))))))...((((((.......))))))..--........... ( -28.40, z-score = -1.29, R) >droMoj3.scaffold_6680 9525074 96 - 24764193 AAAUUGAUGAGCAUGUA-AACAUGUGUCUGUGCGCUCUUAUUUAUGGAUUUCCAUAAAAAUUCAGCGUUACAUAUGCGUCGGAGCUC--UUGAUUGAAG- .(((..(.((((.((.(-..(((((((....(((((....(((((((....))))))).....))))).)))))))..)))..))))--)..)))....- ( -27.30, z-score = -2.57, R) >droVir3.scaffold_13049 13925218 96 + 25233164 AAAUUGAUGAGCAAGUA-AACAUGUGUCUGUGCGCUUUUAUUUAUGGAUUUCCAUAACAAUUCAGCGUUACAUAUGCUACGUAGCUU--UUGAUUGAAG- .(((..(.((((..(((-..(((((((....(((((.....((((((....))))))......))))).))))))).)))...))))--)..)))....- ( -25.20, z-score = -2.36, R) >consensus AAAUUGAUGAGCGUGUA_AACAUGUGUCUGUGCGCUUUUAUUUAUGGAUUUCCAUAACAAUCCAGCGUAACAUAUGUGUCUGAGCCG__UUGAUUGAAGC .(((..(...((........(((((((....(((((.....((((((....))))))......))))).))))))).......))....)..)))..... (-20.14 = -19.43 + -0.71)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:04:57 2011