| Sequence ID | dm3.chr3L |
|---|---|
| Location | 5,344,503 – 5,344,554 |
| Length | 51 |
| Max. P | 0.826492 |
| Location | 5,344,503 – 5,344,554 |
|---|---|
| Length | 51 |
| Sequences | 6 |
| Columns | 58 |
| Reading direction | forward |
| Mean pairwise identity | 77.88 |
| Shannon entropy | 0.39252 |
| G+C content | 0.38816 |
| Mean single sequence MFE | -6.78 |
| Consensus MFE | -5.26 |
| Energy contribution | -5.15 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.826492 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 5344503 51 + 24543557 UUUCACAUUAACCGGAAAAAUCUGCACCAAAUA-------AGUAUCUUGAAGAUACAG ............((((....)))).........-------.(((((.....))))).. ( -6.30, z-score = -1.60, R) >droEre2.scaffold_4784 8035563 51 + 25762168 UUGCUCGUAAACCGGAAAAAUCUGCACCGAAUA-------AGUAUCUCGAAGAUACAG (((.(((.....((((....))))...))).))-------)(((((.....))))).. ( -7.60, z-score = -0.93, R) >droYak2.chr3L 5910398 51 + 24197627 UUGCCCGUAAACCGGAAAAAUCUGCACCGAAUA-------AGUAUCUUAAAGAUACAG ....(((.....)))..................-------.(((((.....))))).. ( -7.50, z-score = -1.76, R) >droSec1.super_2 5289521 51 + 7591821 UUCCACGUUAACCGGAAAAAUCUGCACCAAAUA-------AGUAUCUCGAAGAUACAG ((((.........))))................-------.(((((.....))))).. ( -7.00, z-score = -1.60, R) >droSim1.chr3L 4858799 51 + 22553184 UUCCACGUUAACCGGAAAAAUCUGCACCAAAUA-------AGUAUCUCGAAGAUACAG ((((.........))))................-------.(((((.....))))).. ( -7.00, z-score = -1.60, R) >droGri2.scaffold_15110 7145393 54 + 24565398 ----GAAGAAAUCGGACAAAUCUGCACUGACUUCAGCCACAAUAACUCAAGGAUAUUG ----...(((.((((.((....))..)))).))).....(((((.(.....).))))) ( -5.30, z-score = 0.09, R) >consensus UUCCACGUAAACCGGAAAAAUCUGCACCAAAUA_______AGUAUCUCGAAGAUACAG ............((((....)))).................(((((.....))))).. ( -5.26 = -5.15 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:04:49 2011