| Sequence ID | dm3.chr2L |
|---|---|
| Location | 4,357,490 – 4,357,585 |
| Length | 95 |
| Max. P | 0.740499 |
| Location | 4,357,490 – 4,357,585 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 80.25 |
| Shannon entropy | 0.36477 |
| G+C content | 0.51472 |
| Mean single sequence MFE | -33.73 |
| Consensus MFE | -24.11 |
| Energy contribution | -25.12 |
| Covariance contribution | 1.01 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.740499 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 4357490 95 + 23011544 CCCAUGGGAUUUCCCUGGGAGUCCGUUAG-CUGGCCUUGUGUUUCCUCUGGAUGAUUAAAGUAUCUAAAG------AGAAAGGGCGUGGGAGCCACUCUGAC ((((.(((....))))))).....(((((-.((((((..(((((.((((....(((......)))...))------))...)))))..)).))))..))))) ( -33.40, z-score = -1.50, R) >droSim1.chr2L 4279318 96 + 22036055 CCCAGGGGAUUUCCCUGGGAGUCCGUUAGGCUGGCCUUGUGUUUCCUCUGUAUGAUUAUAAUAUCUAAAG------CGAAAGGGCGUGGGAGCCACUCUGAC (((((((.....))))))).....(((((..((((((..(((((..((.((..(((......)))....)------)))..)))))..)).))))..))))) ( -35.90, z-score = -1.92, R) >droSec1.super_5 2454775 95 + 5866729 CCCAGGGGAUUUCCCUGGGAGUCCGUUAG-CUGGCCUUGUGUUUCCUCUGGAUGAUUAAAAUAUCUAAAG------CGAAAGGGCGUGGGAGCCACUAUGAC (((((((.....))))))).(((...(((-.((((((..((((((((.((((((.......)))))).))------.)))...)))..)).))))))).))) ( -35.30, z-score = -2.05, R) >droYak2.chr2L 4390628 101 + 22324452 CCCAGGGGCUUUCCCUGGGAGUUCGUUAU-AUGGCCUUGUGCUUCCUCUGGAUGAUUAAAAUAUCUAGGCAGAAACAGAAAGGGCGUGGGAGCCACUCUGAC (((((((.....))))))).....((((.-.((((((..(((((..((((..((.(((.......))).))....))))..)))))..)).))))...)))) ( -35.90, z-score = -1.37, R) >droEre2.scaffold_4929 4439552 95 + 26641161 CCCAGGGGAUUUCCCUGGGAGUCCGUUAG-UUGGCCUUGUGCUUCCUCUGGAUGAUUAAAAUAUCUAAGC------AGUAAGGGCGUGGGAGCCACUUCGAC (((((((.....)))))))....((..((-(.(((((..(((((...(((...(((......)))....)------))...)))))..)).)))))).)).. ( -35.80, z-score = -1.83, R) >droAna3.scaffold_12943 1533458 95 - 5039921 -CCGCGGGGAGUUACCGAACGACCGUUAG-UUGGCCUUGUGCUUCCUCUGGAAAAGUCUUUAAUCUAAAAAG----CGACAAAGCGUGGGAGC-GUUUUGUU -(((.(((((((....(..((((.....)-)))..)....))))))).))).....................----.((((((((((....))-)))))))) ( -26.10, z-score = 0.04, R) >consensus CCCAGGGGAUUUCCCUGGGAGUCCGUUAG_CUGGCCUUGUGCUUCCUCUGGAUGAUUAAAAUAUCUAAAG______AGAAAGGGCGUGGGAGCCACUCUGAC (((((((.....))))))).....(((((..((((((..(((((..((((((((.......))))))..........))..)))))..)).))))..))))) (-24.11 = -25.12 + 1.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:16:14 2011