| Sequence ID | dm3.chr3L |
|---|---|
| Location | 5,324,380 – 5,324,449 |
| Length | 69 |
| Max. P | 0.842520 |
| Location | 5,324,380 – 5,324,449 |
|---|---|
| Length | 69 |
| Sequences | 8 |
| Columns | 72 |
| Reading direction | forward |
| Mean pairwise identity | 63.77 |
| Shannon entropy | 0.73200 |
| G+C content | 0.39777 |
| Mean single sequence MFE | -10.03 |
| Consensus MFE | -2.88 |
| Energy contribution | -3.16 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.29 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.88 |
| SVM RNA-class probability | 0.842520 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 5324380 69 + 24543557 UAAACUUUGCGUAUUACGUAUACGCCAUGUUGUAAUGAAACCCUAGCAUGAAAAACCCC---CCUUUUACUC ........((((((.....))))))(((((((...........))))))).........---.......... ( -10.90, z-score = -2.97, R) >droPer1.super_27 94576 52 + 1201981 UCUUCUCUGCGUAUUACGUAUACGUCAUGUUGUAAUGAACUUCGUUCCAGGC-------------------- .....(((((((((.....)))))((((......)))).........)))).-------------------- ( -7.00, z-score = 0.08, R) >dp4.chrXR_group6 4972358 52 - 13314419 UCAUCUCUGCGUAUUACGUAUACGUCAUGUUGUAAUGAACUUCGUUCCAGGC-------------------- .....(((((((((.....)))))((((......)))).........)))).-------------------- ( -7.00, z-score = 0.28, R) >droAna3.scaffold_13337 10071985 55 - 23293914 ------------UCAACUUGUAAUGAAAGUUGUAAUGAA--CUGGGCUUCAGACUCUCGUCCCUUCAUU--- ------------.((((((.......)))))).((((((--..((((...........)))).))))))--- ( -10.60, z-score = -1.02, R) >droEre2.scaffold_4784 8014637 69 + 25762168 UUAACUUUGCGUAUUACGUAUACGCCAUGUUGUAAUGAAACCCCAGCAUGAAAUACCC---ACCUCUUUCUC ........((((((.....))))))(((((((...........)))))))........---........... ( -12.70, z-score = -3.23, R) >droYak2.chr3L 5889538 72 + 24197627 UAAACUUUGCGUAUUACGUAUACGUCAUGUUGUAAUGAAACACCAGUAUGAAAAACCCCGCACCUCUUUCUC .......((((.......(((((....((((.......))))...)))))........)))).......... ( -9.06, z-score = -0.63, R) >droSec1.super_2 5269268 68 + 7591821 UAAACUUUGCGUAUUACGUAUAUUUCAUGUUGUAAUGAAACCCCAACAUGAAAAACCC----CCUCUUACUC .......((((.....))))..((((((((((...........)))))))))).....----.......... ( -12.20, z-score = -4.55, R) >droSim1.chr3L 4838421 68 + 22553184 UAAACUUUGCGUAUUACGUAUACGUCAUGUUGUAAUGAAACCCCAGCAUGAAAAACCCC---C-UCUUACUC .........(((((.....)))))((((((((...........))))))))........---.-........ ( -10.80, z-score = -2.63, R) >consensus UAAACUUUGCGUAUUACGUAUACGUCAUGUUGUAAUGAAACCCCAGCAUGAAAAACCC____CCUCUUACUC ........((((((.....))))))............................................... ( -2.88 = -3.16 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:04:43 2011