| Sequence ID | dm3.chr3L |
|---|---|
| Location | 5,243,962 – 5,244,071 |
| Length | 109 |
| Max. P | 0.500000 |
| Location | 5,243,962 – 5,244,071 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 73.66 |
| Shannon entropy | 0.51137 |
| G+C content | 0.29758 |
| Mean single sequence MFE | -18.00 |
| Consensus MFE | -10.65 |
| Energy contribution | -10.55 |
| Covariance contribution | -0.10 |
| Combinations/Pair | 1.47 |
| Mean z-score | -0.84 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3L 5243962 109 + 24543557 AUUAAUGUCUUGUCAUUUUGUUUUGCUUUUUUU-CUUCAACCAAUUUAACUUAUUGGCCAACUAAGCUUGUUAUUGGUUUGUGGUCAAAUUUUGCAACGUGGCGAAAAAU .........(((((((.((((......(((..(-(...((((((..((((...((((....))))....))))))))))...))..)))....)))).)))))))..... ( -18.40, z-score = -0.20, R) >droEre2.scaffold_4784 7939232 109 + 25762168 AAUUCUGUCUUGUUAUUUUGUUUUGAAGUUCUU-UUUCAAUCAGUAUAGCCUAUUGGCUAACUAAACUCGUUAUUGGUUUGUGGUCAAAUUUUGCAACGUGCUAAAAAAU ...........(((((.(((..((((((.....-)))))).))).)))))...(((((((..(((((.((....)))))))))))))).((((((.....)).))))... ( -17.20, z-score = -0.60, R) >droYak2.chr3L 5808554 109 + 24197627 AAUACUGUCUUUUCAGUUUGUUUUGGUUUUUUU-UUCCAAUCAAACUAACUUAUUGGCCAACUAAACUUGUUAUUGGUUUGUGGUCAAAUUUUGCAAUGUGGCGAAAAAU ..............((((((..((((.......-..)))).))))))......(((((((..((((((.......))))))))))))).((((((......))))))... ( -23.80, z-score = -2.05, R) >droSec1.super_2 5196795 109 + 7591821 AUUACUGUCUUGUCAUUUUGUUUUGAUUUUUUU-AUUCAACCAAUCUAACUUAUUGGCCAACUAAACUUGUUAUUGGUUUGUGGUCAAAUUUUGCAACGUGGCGAAAAAU .........(((((((.((((...(((((..((-((..((((((..((((...((((....))))....)))))))))).))))..)))))..)))).)))))))..... ( -21.10, z-score = -1.48, R) >droSim1.chr3L 4762981 110 + 22553184 AUUACUGUCUUGUCAUUUUGUUUUGAUUUUUUUUAUUCAACCAAUCUAACUUAUUGGCCAACUUAACUUGUUAUUGGUUUGUGGUCAAAUUUUGCAACGUGGCGAAAAAU .........(((((((.((((.((((..........)))).............(((((((....((((.......))))..))))))).....)))).)))))))..... ( -20.30, z-score = -1.28, R) >dp4.chrXL_group1e 10252391 98 + 12523060 ---GAAGUCCUCUUGCAU--UUUAAAUCCUCUUUCCUCUUUUUCAUCUAUUUAUUAGUUU-CAGAUUUUGAAUUUACGUCUUAUUCAAGUUUCGAAUU------AAAAAU ---...............--.................................(((((((-.((((((.((((.........)))))))))).)))))------)).... ( -7.20, z-score = 0.53, R) >consensus AUUACUGUCUUGUCAUUUUGUUUUGAUUUUUUU_AUUCAACCAAUCUAACUUAUUGGCCAACUAAACUUGUUAUUGGUUUGUGGUCAAAUUUUGCAACGUGGCGAAAAAU .....................................................(((((((..((((((.......))))))))))))).((((((......))))))... (-10.65 = -10.55 + -0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:04:38 2011