| Sequence ID | dm3.chr3L |
|---|---|
| Location | 5,235,845 – 5,235,979 |
| Length | 134 |
| Max. P | 0.869969 |
| Location | 5,235,845 – 5,235,979 |
|---|---|
| Length | 134 |
| Sequences | 6 |
| Columns | 140 |
| Reading direction | reverse |
| Mean pairwise identity | 75.55 |
| Shannon entropy | 0.45964 |
| G+C content | 0.45995 |
| Mean single sequence MFE | -41.53 |
| Consensus MFE | -22.38 |
| Energy contribution | -25.53 |
| Covariance contribution | 3.16 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.99 |
| SVM RNA-class probability | 0.869969 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 5235845 134 - 24543557 CAAGUUGGUCAAGUUUUUGGCCAACUUGUCCGCUUGA--CGGUUGACUUGA---GUCAAGUGGAAUUGGCUUGACUUGUUGGCCCAUUUGGCAUUGUUUUGGCUUCAACAAACA-GUGUCUAGCAUUGACAUUCUUGAAA ((((...((((((((...(((((((..(((.(((...--((.(((((....---))))).)).....)))..)))..))))))).....((((((((((.(.......))))))-))))).))).)))))...))))... ( -48.00, z-score = -3.25, R) >droEre2.scaffold_4784 7930918 134 - 25762168 CAAGUUGGUCAAGUUUUUGGCCAACUUGUCCGCUUGU--CGGUUGACUUGA---GCCGAGUGGAAUUGGCCCGACUUGUUGGCCCAUUUGGCAUUGUUUUGGCUUCAGCACACA-GAGUCUAGCAUUGACAUUCUUGAAA ((((((((((((....))))))))))))...(..(((--((((.(((((..---(((((((((.....(((.((....))))))))))))))..(((....((....))..)))-)))))....)))))))..)...... ( -44.60, z-score = -1.59, R) >droYak2.chr3L 5800422 137 - 24197627 CAAGUUGGUCAAGUUUUUGGCCAACUUGUCCGCUUGUGCCGGUUGACUUGA---GUCGAGUGGAAUUGGCCUGACUUGUUGGCCCAUUUGGCAUUGUUUUGGCUUCAGCACACACGAGUCUAGCAUUGACAUUCUUCAAA ((((((((((((....))))))))))))((((((((..(.((....)).).---..))))))))....((..((((((((((((.....))).........((....)).)).)))))))..)).((((......)))). ( -45.50, z-score = -1.60, R) >droSec1.super_2 5189089 137 - 7591821 CAAGUUGGUCAAGUUUUUGGCCAACUUGUCCGCUUGA--CGGUUGACUUGAGCCGCCGAGUGGAAUUGGCCUGACUUGUUGGCCCAUUUGGCAUUGUUUUGGCUUCAACACACA-GUGUCUAGCAUUGACAUUCUUGAAA ((((((((((((....))))))))))))((((((((.--(((((......))))).))))))))...((((.........))))..((..(...((((...(((...((((...-))))..)))...))))...)..)). ( -50.10, z-score = -2.96, R) >droSim1.chr3L 4754462 114 - 22553184 -----------------------ACUUGUCCGCUUGA--CGGUUGACUUGAGCCGCCGAGUGGAAUUGGCCCGACUUGUUGGCCCAUUUGGCAUUGUUUUGGCUUCAACACACA-GUGUCUAGCAUUGACAUUCUUGAAA -----------------------.....((((((((.--(((((......))))).))))))))..(((.((((....)))).)))((..(...((((...(((...((((...-))))..)))...))))...)..)). ( -35.50, z-score = -1.43, R) >droMoj3.scaffold_6680 11641538 110 - 24764193 ------------UAACUUGGCCAAGUUGUUUUGUUUUAUUUUUUGG--UGACUUGUCGCUUGGCUUAGGCAAUGCUU--UGCCGCAC---GCAUUGUUUUGGCUUCCA-----------UUGGCAUUCGCAUUCUUUAAA ------------((((((....)))))).................(--(((..(((((...((((.(((((((((..--........---))))))))).))))....-----------.))))).)))).......... ( -25.50, z-score = 0.07, R) >consensus CAAGUUGGUCAAGUUUUUGGCCAACUUGUCCGCUUGA__CGGUUGACUUGA___GCCGAGUGGAAUUGGCCUGACUUGUUGGCCCAUUUGGCAUUGUUUUGGCUUCAACACACA_GUGUCUAGCAUUGACAUUCUUGAAA .((((((((((......))))))))))(((.(((......))).))).......(((((((((.....(((.........))))))))))))..((((...(((...((........))..)))...))))......... (-22.38 = -25.53 + 3.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:04:36 2011